Gene detail

Detailed information of FUN_032681-T1 in Acropora pulchra

Genomic Location: ptg000023l:34888790...34900395
NR annotation: XP_029206842.2, nicotinate phosphoribosyltransferase-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_032681-T1

TCCCTAGCAGAGGAGTAGTAAAGAATCATCATCGTGTTGAACAACAACAATGGCGGCAGTTGAAGAAAGAATGAATTCAAATCCTTTAGTGCAGCCATTACTGACAGATTTCTACCAAATTACCATGGCCTATGCTTATTGGAAGAGCGGCAAAGTCCTGGACAATGCAGTGTTTGACTTGTTTTTCCGTAGGAATCCTTTCCAAGGAGAATTTACCGTCTTTGCGGGGTTGGAAGAATGTGTACATTTTGTTAGGAACTTCCACTATTCGGATTCGGACATTTCGTATCTGAAGACAGTGATGCCTTCAACAGTAGAAGAAGAGTTTTTCACTTTCCTGCGAGGAATTGATGGAAGCCAAGTTACTCTTAGTGCTCTACTTGAGGGGAGTTTGGTTTTCCCTAGGGTACCGTTGATGAGACTAGAGGGACCCCTGCCAGTGATACAGCTTATGGAAACATCTCTTCTTAACTTAGTAAATTTTGCAAGCCTCGTCGCAACCAATGCTGCTAGGTTTCGTCTCGCGGCAGGATGGGACAAAGGTTTAATAGAATTTGGTCTGCGAAGATCTCAAGGACCCGATGGTGGATTGTCGGCATCGAAGTACTGTTACATTGGAGGGTTTGACGCGACGAGCAATGTGTTAGCTGGCAAATTATGTGGGATTCCGGTAAAGGGGACCCAGGCTCACGCTTTCATTACATCATTTACACCTGACGAATTTCCGCATGTTGGCAAGCTGCAGCCTGTGGACAAGAGCCAAGAACCTAGAGACTTCTATCCAGTCGTGTGCAACTGGCTGAAAAAAGTAACGCCCGTGCTACGAGTATTAGAGAGCGAAGTTCATTTGGGTGAATTGACGGCGTTTTCTGCGTACGCTGTCGCTTTCCCAAACCAGTTCCTTGCCCTTGTTGATACGTACGATGTCATCAGGAGCGGTATTCCCGGATTTTGTGCCGTGGCATTGGCTCTCAATGACTTTGGATTTCAAGCGCTGGGAGTCAGGATAGATTCGGGCGATTTAGCTTATCAATCAAAACTTATCAGACAATGCCTGGCAAAGGTAGCAGAAGTGTTTGGCTTGCCTTGGTTTTCAACGAGGAGAATTGTCGCCAGCAACGATATCAACGAGGAGACACTCTTATCGCTAAACCAACAAGGTCATGAAATTGATACCTTTGGTATTGGAACCCATCTTGTTACGTGCCAAAAGCAGCCTGCCCTAGGATGTGTTTTCAAGCTCGTAGAATTAAACGGCGATGCACGGATGAAGCTGAGTCAAGATATCGAAAAGGTCACCATACCAGGAAAGAAGGAGGCCTTCAGGTTGTACGGTGGAGATGGTCGCGCTCTTCTTGATCTCATGCAGAGATGCGACGATACTCCACCTTCTCCAGGAAAGAGGGTATTATGCCGTCACCCGTTTGACGAGGCGAAGCGTGCTTATGTCTGCCCATCGCACGTGGAAACGTTGTACCACGTTTACTGGAAAAACGGCAAGATTTGCAGTCCCCTGCCGTCTTTGAAGGAAATTCAAGAACATGTGAAGAGTTCTCTGACACTCTTTAGGCAAGATCATATGAGAGGTTTAAATCCGACGCCATACAAGGTTTCCCTCAGTGACAATTTATACACTTTCATGCATCGATTATGGCTGAACCATGCACCCATTGGAGAGTTGTTCTAGAGACCAGAATTCAGCGGACTTCACAATTCCCGGCATTCTTTTCAAGTTGTGACTCACGTGGTCATACAAACCTCTGACGTCGTTTTCTACGCAATCTTGACGTCAAAGGATTCAACTCCTGAAGAAGAGCACTGATAAATTTGTCTTTCAGGAGTTGCACAAGTTGGAGTTCGCTGGCAGAGCTCAAATATTTCCCCTGATTGTTGCTAGTTTCATAAGCGAAAGTTTCATTGAAAGATGTGTCAATTTGTTACGTAACCAATGCTGCTAGATCTCAGATATATCCATATTTTTTTAAATTACCTTTGCATAATATTATCACATAATTAGTTTTCAGACGCAAGGAGCCTTTTTACAACAACTCACCACACCTTACTACCCAATCATTAAAAAACGTACAGAGAGCAAGAAATTCGAGTGTTCGCCAATGCATTGGATTTAGTTATAGCAGGAGCCTATGAGTGGGAGCACGCTCATACTAAGCCTATGTCACGGCATTTTTACAGACTGATCTCTTTTTAGCATACTTTTCCTTGTGTGAAAGAAAGGCAGTGCTTTCTGTCCAGTAGCGCAGTGACGTCAATAAGCTTCTTGTGATTGGTCATGGCGCTCTCACGGGAGTGACGAGTCCCAGGGAAATTCGATCTAAAAATACATCGGCCTATGAAAACGCCGTGACAGGAATATAGGGGAGTTGCATGCCTCTACTAATCGGCTCCTGGTTATGGCGATAGGGAAATTAGTGGGGGAAGGGGAAAGGTTAATGCAGAAAAATGTATGGAACGTCGAATAGGCGATTTGCATGATGGCGTCATTTTGCTAAGAAGACCACGCTGCTTTGAGTTGCTTCTATTGTCAGGCAAATTTAAACAGTTGCTTCTTCGTTCCCAGGAGCGGAAGAAAAAGCTGAATAAAAAAGCGTTTTGACAAAGCATTCTGATCTCCGTAGTAAAATGACGCCATCATGCAAATCACTAATTGTCTTGTTTTGCCCTAGTTGTTGGAAGTAGAATCAACACTATCCATTGGGCAAATCACTATCACTAAATAACTCAACAGGTTGTGGCAGTACTTGTCCAAAGGATACCGATTAATTAAGCCATTGACTGAGTCGAATACTACGCTCGTTTCTCTTGGTTCTTCTTGATTTCGCCTTCAAATTCTGCAAGCTTAAGTCCGGATGTTTACAAGGCTCGTCTTGCTTTCAGTTTGCCATGAAAAGCGCGCTTTGGGTTAACTTACGCAATCGTTGATTAGATTTGGAGTTGATTGTTTTTGAGAAATTGCTGTCATTTTCCTCACTGAGAAGTGAAGTATGAACATCGGCTTAGAAAAAATAGCGTAATAGCTAAAAACAAAAAACAAAACAAAATCGGCGAGATCACGATCTTATCCATCTCGTTCCCAGAGGCCCAAGGCTAGGGTAACGAGGGACCCCGGGAAGGAGATTGCGGTCTTATGACATGCTGTCGTTGTCTTTTTCATGTAGGAAGCACCAGAGCCACGTTAACGCGGAGGCTTTTTCAAAATTTTCGAGCAGTCGTGAATGAGACCGAGTGTCCGTGTAACAAAACATGCAGCAGGCTGCAAGAAAACAATAGGCCTCTGCAGAATTGAACGTAGGACCTCAAGCGCATGCTTAGATCGAATAAAACAGAAATGGAAGAAAACTCAATCTCCTCACGGCCGTAAATTTTTAATTGCCGTCTTTGCGTTCACGGTATTGTGGATTTTTTAAAAGCTGTTACCCAGACCCCAAGGAATTTTCAGCTCATAATAAAGAACGCACTGCATATGATCGATGCATAAATTACTTCAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VQX4	Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster OX=7227 GN=Naprt PE=2 SV=2
Q95XX1	Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans OX=6239 GN=nprt-1 PE=3 SV=3
Q84WV8	Nicotinate phosphoribosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=NAPRT2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004085 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17767 all species →	NAPRTase_N	Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain	Domain	Interproscan
PF04095 all species →	NAPRTase	Nicotinate phosphoribosyltransferase (NAPRTase) family	Family	Interproscan
PF17956 all species →	NAPRTase_C	Nicotinate phosphoribosyltransferase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007229 all species →	Family	Nicotinate phosphoribosyltransferase family	Interproscan
IPR040727 all species →	Domain	Nicotinate phosphoribosyltransferase, N-terminal domain	Interproscan
IPR041525 all species →	Domain	Nicotinate/nicotinamide phosphoribosyltransferase	Interproscan
IPR036068 all species →	Homologous_superfamily	Nicotinate phosphoribosyltransferase-like, C-terminal	Interproscan
IPR041619 all species →	Domain	Nicotinate phosphoribosyltransferase C-terminal domain	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR006405 all species →	Family	Nicotinate phosphoribosyltransferase pncB-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11098 all species →	NICOTINATE PHOSPHORIBOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004516 all species →	Molecular Function	nicotinate phosphoribosyltransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0034355 all species →	Biological Process	NAD salvage	Interproscan
GO:0009435 all species →	Biological Process	NAD biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00763	pncB, NAPRT1; nicotinate phosphoribosyltransferase	EC:6.3.4.21	Nicotinate and nicotinamide metabolism	ko00760	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora pulchra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora pulchra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →