Detailed information of FUN_032790-T1 in Siderastrea siderea

Genomic Location: contig_35:678484...695264
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_032790-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR051937
all species →		FamilyR3H domain-containingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15672
all species →		CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_032790-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_032790-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_032790-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
26TPM > 0
7Conditions
206.1Max TPM
24.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 4 17.57 177.96
holobiont · low.pH Control.temp 20 5 24.54 206.14
holobiont · control.pH_high.temp 20 5 24.16 122.26
holobiont · control.pH Control.temp 19 6 36.70 189.62
Whole organism 4 4 13.85 17.90
unannotated 1 1 12.36 12.36
live coral tissue/skeleton 1 1 11.61 11.61

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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