Gene detail

Detailed information of FUN_032852-T2 in Colpophyllia natans

Genomic Location: contig_115:245020...278835
NR annotation: CAH3133867.1, unnamed protein product, partial [Porites lobata]
Species Colpophyllia natans · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_032852-T2

ATGCGCTCGGCAATGTGTCTTCCAACTTCGGTTTCGCTGGTTTTGATATTCATGGTGACGAATGTTACTTGTACAGTTCGAGCGCTTAATGTGCAAACTGGCAAGCTCAACATGTCGCAAACGTTTCAAGATTGGAGTTGTAGCAGTGGATGTTCACCTCCTCTAAATTGTCGACTGGCTGTTTGTACGAGCGTTGCATTTCCTCAAGCGTTTAGTGGATCGGCAAACGTTCAAGTACACGTGTCAATGAGCCACGGTGAAGAGTTTTCACGTGTTCACTCGCCTTCTGCTGTGTGGGTTCAGTCCATTAGTACACGTGGATTTGAGTTCTGTTCACGTGAAACAGGGACTGGATCAAATAAAACTGGAATCATCAACTGGCTGGCCTATCAAAACCCTCCAAAAATGATACATGGCAGTGTGACTTTTCAAGGAATGTGGACAACAGAAAGCAAATGTGACAAAGTTGCATTCTCACAGAGCTTTGGTGGAAGACCTTCTGTGTTTGTCTCAGCTAAGTACGCTCGTAGTACAAAGCCTGATGACGCAATGTATGTTTGGTTGGAGAACGTGAATTCTGGAAGTTTCGAAGTTTGCATCCGGGAATCCTTGCCTTTTGACGGAAAACATCAAGACACAATTGTGgatTGGTTTGCTTTTCATGGCAATGCGTCTGAGTTTAATTTTACGTTGGTAGGAGAAGCGTTTTTCCCCAACACTGGAAACCCAACAGCTGACGATAACTATGGCTTTTGTCAACAAGTGCAGTTCAACACCACCTTTTATGCATCACCAGAGTTACTTGTGTCTGTTCATCATGATTACGATCGTAAAGTGAAAAAACACATTCCACCAGAATACAACATAATAACAGCCTGGGTCGAGGAAGTTGGTCTGACAGACATGAGAATTTGTGTGAAAGACTTGAGTGGATCAGGAAGTAAACACGACCCTCTGTCTGTCAGCTATGTTGTCATTGGAGATCTGAACCCGTGCCTTGACGTGCATTGTCCATCATTTGGAGTGTGTAAGACTTTCAGCGCTCACGAATCTCGCTGTGTGTGTTATGAAGACTGCCCTTCCTATCATGACCCAGTGTGTACTGCGAATGGAACAACATATGACAACAAATGCTGGCATGAGTTGTATTACTGTAGGGGACTGGAGAATAATCTGGTGTATCACCCAGGAAGCTGTGAGGGTTTTCCACTTGTGCACGGTCGAGTAGAACTTCTTCGTGTACCAAAGTGGTCTGATTCAAGCTGTCAGACAGTCGCATTTCCGCCATACCGCTTTTATCCAGATAAACCGGTCCATGTGCAGATAACCGTCAATCACATGAATCTAAACGATTCTGAAACTGTGCACGATGCCATAACTTCCTGGACTGAAAACATCAATACAAAGAATTTTACAGTTTGCGCAATGCAGTCTGGGAGAAAGAGCAACAACTTTAACCCGTTTGCAACAGTTGATTGGATGGCGTACCAGGGAGCACCGCCTGAAGGTATGACGGGAGAAATCGATATGCAGAAATGGTGGTCTGGAACAAATTGTGCAGATGTGACTTTTCCCAAGAACAAGTTTAAGGATGAGCCTGTAGTACTCATAACAGCAGAACATCTAAGGACTGGTAAGGAGTATGATGCCGCGCTGATCTGGACAGAGGATGTAACCAAGGATTCATTTAAAGTCTGCCTCAGAGAATTGCAAAACTTTGATGGAAAACATGAAGATATTAGTGTGAACTGGTTGGCGTTCTCTAAACTTCACAAGCCACTCTTCACTGAACATGGCTCTGTCAAGTTTCCAAACACAAACCCACCAacagatgaaaacaacaacGCTTATTGTGAGTTTGTGCGGTTTACACGAAGTTATAACATTACACCATTAGTCCTgatatcagccaatcacagcacaacaGCAAGTGGAAACTTGGCACCAGTTCATAACGGAATCACAACATGGATTGAGAACATGAATACGTCTGGATTCAGAACTTGTGTCAAGGAACTGTATGAGACCAGATATGATCCAGTCTCAGTTAGTTATGCGGTCATAACAGACATCTGTGATCCTGGTTGGAGCTACTTTAATGGCTACTGCTACTTTACAAGTGTAAGTTGTAAAAACTGGACCGCAGCGGTGCAGAAATGTCGCGAAGAAGGCTCTGTTCTTGTTGATGTCGGCAGCAATGAAGAGAATGTGTATTTACAGCATCGACATAATGGCATCATATCTTGGCTGGGCTTAAATGATAGAGCCATAGAGGGAAATTTTACATGGGCGGATCGAGGACAAGGAAACTTTACATCTTGGGCCAAAAATCAGCCAAATAATTTCAGAGGAGAAGATTGTGTACATGCACTTGGTGTGGAACACAGTTATGAATGGAATGACGTGCAGTGTAGCGATTGTCATCCCTACACTTGTAagaaagATCTAAATGAATGTGACAGAAATACAAACGACTGTGATCAGCATGCCAGTTGTACAAATGATCGTGGATCATATTCGTGCAAGTGTAACCATGGTTTTATTGGAGATGGCGTCAAGTGCGTTCCTATTATAACGGATTCCTGTTCTTCAAGAAGGAAATACGTCAGTGTAAgtggaaattacaaaattgatcCAGATGGCGCGGGAGGCCTGGCACCATTCACTGTTTACTGTGACATGAGTAACAAAAATGGAGTTGGCGTGACAGTTATCAGTCACGACAGTGAAAGCAGAAGGTATGTGCATGGATGTCAGTCTCAAGGCTGTTACTCACGTAACATTCATTACACAGGAGCGAGTCTTTCTCAACTGGCGAGTCTCACCAAAGTTTCATCACACTGTGAACAGTTTATCAAATATGAGTGTTATAATTCAGGGCTGGTGGTGTTTGAATATGGTTggtgggtgtcacgtgattctAGTAAGATGACTTACTGGGGCGGAGCATCACCTGGTAGTGGTAAGTGCGCATGTGGGATGACCAACTCATGTGCAAACCCTAGTCGTGGTTGTAACTGTGATAAGAGTGACAATGTATGGCGTGAAGACAGTGGTCTCCTCACCGACAAGACAAGTCTGCCAGTTAAACAGCTCAGGTTTGGTAATCTGGCATGGGGTAGCAACAAACAAGGTTACTATACGCTGGGAAAACTGAAATGCTATGGCcaagcataa

Transcript

FUN_032852-T2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28670	Aggrecan core protein OS=Oryctolagus cuniculus OX=9986 GN=ACAN PE=2 SV=2
Q28343	Aggrecan core protein OS=Canis lupus familiaris OX=9615 GN=ACAN PE=2 SV=2
Q6ZS10	C-type lectin domain family 17, member A OS=Homo sapiens OX=9606 GN=CLEC17A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09458 all species →	H_lectin	H-type lectin domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050111 all species →	Family	C-type lectin and snaclec domain-containing protein	Interproscan
IPR019019 all species →	Domain	H-type lectin domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22803 all species →	MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_032852-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.