Detailed information of FUN_032865-T1 in Siderastrea siderea

Genomic Location: contig_35:1532708...1553307
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01483
all species →
P_proproteinProprotein convertase P-domainFamilyInterproscan
PF14843
all species →
GF_recep_IVGrowth factor receptor domain IVDomainInterproscan
PF16470
all species →
S8_pro-domainPeptidase S8 pro-domainDomainInterproscan
PF00082
all species →
Peptidase_S8Subtilase familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006212
all species →
RepeatFurin-like repeatInterproscan
IPR009030
all species →
Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR000742
all species →
DomainEGF-like domainInterproscan
IPR022398
all species →
Active_sitePeptidase S8, subtilisin, His-active siteInterproscan
IPR036852
all species →
Homologous_superfamilyPeptidase S8/S53 domain superfamilyInterproscan
IPR015500
all species →
FamilyPeptidase S8, subtilisin-relatedInterproscan
IPR034182
all species →
DomainKexin/furin catalytic domainInterproscan
IPR023828
all species →
Active_sitePeptidase S8, subtilisin, Ser-active siteInterproscan
IPR002884
all species →
DomainP domainInterproscan
IPR032778
all species →
DomainGrowth factor receptor domain 4Interproscan
IPR008979
all species →
Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR038466
all species →
Homologous_superfamilyPeptidase S8, pro-domain superfamilyInterproscan
IPR023827
all species →
Active_sitePeptidase S8, subtilisin, Asp-active siteInterproscan
IPR032815
all species →
DomainPeptidase S8, pro-domainInterproscan
IPR000209
all species →
DomainPeptidase S8/S53 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42884
all species →
PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004252
all species →
Molecular Functionserine-type endopeptidase activityInterproscan
GO:0006508
all species →
Biological ProcessproteolysisInterproscan
GO:0005802
all species →
Cellular Componenttrans-Golgi networkInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0016485
all species →
Biological Processprotein processingInterproscan
GO:0030173
all species →
Cellular Componentobsolete integral component of Golgi membraneInterproscan
GO:0008236
all species →
Molecular Functionserine-type peptidase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_032865-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_032865-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
9TPM > 0
7Conditions
15.2Max TPM
1.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 0.64 12.84
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 2 0.81 13.11
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 10.14 11.72
unannotated 1 1 8.83 8.83
live coral tissue/skeleton 1 1 15.22 15.22

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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