Gene detail

Detailed information of FUN_032908-T1 in Siderastrea siderea

Genomic Location: contig_35:2345443...2358156
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_032908-T1

ctcggagtgtggattcttcagaccactaatccgtgattaatccattttcggatttaggtaaagaaacgcaaaatccgtttttggatacaagaatccggatttggattttcgtCCCCAGGCGCCGTTATAGCGCGGACAAACAGGGAGCGCGGGGcgtcgtgggaaggatgcaaaacgCGGAATGTACATATCCCACAACCCCGCACACACCGCCAAATAACaaggagggacgcctggggacgaggcaagTTCAGATTGGTGTCTGAATCCCGTTTCGGGTGATACATTTCATTTAGCAAACTTAAATCTTCCTTATAGCATCTGTTCAGCTAGGCACAGTACAAACAAATGACAAATGGATTGTTTTCACGTTTATCTTCGACTTAGctcgaaaatccaaacaacCTGAATCCGATGCGAGTTAAACTAGGCACGCGGGTGTTAGGCGGAGTTTCCCCAATCCTCCTATTCAAACCACATGTTAATGACTCGGTACGAGTTAGTATATTGCGCATGGATGTTGAGAGACCACAGCAGTAAAAAGTTAATACCTTTAAAGATTTTTCCTCAACTAGCATAAAAATTCAAACCATCTGAAATCCTACAGTGATTTTACTTATCCCATGAAATAGATACTGAACTATTAACTGAAATAGATACTGAACTAATAACGGCGAGGatcctctttacatttattacccACTATTACTCACTTATtctattgctttcttttgtttagctttgactattagacatTAATTGCTAGATATTGATTCACGGGTTAAGTAGAATCACCCTAAGTAGGAAACCGAATTGAATAACAGGTTCCCACGATTTCGTCATGAAGTGCAGTGTCACGATGACAGCTTGGAAGTCTTCCAAACATTAGTATAGAGTCTGCGGTCTTTGGAGTAGACGGTCAAATATGTCGACGAAGTATGCCGACAGGCTAACACATCCGCCTCTAACAATTGAGCAAATATCGGATGACTAAGGCACGCAACagagaaaaatttaaaacaaattcaactCCACCGTTCAGAGCAAGTCGCTTTCCGTGAACAAAAATATCAAAACTAAATCAGCTGCATTCGGGTAGAACAAGTCTTGTTCTGTTTGTGAGAATAGAAAAATCCAAGACAAAATTAACTCTATTCAAGATAGAAGGTCTTATTTTATTTGTAGACGTGTTATTCTCTAACTAGAATTTTCCACAATAATATTGTTTGAATTTTAATCTGAGGTCTTATTACGTGCTAATTTAAGAGAGGCAATGTGTACTAATGTGAGTTCTCGAAGGGAAAACCGGCAAATCATGATTAGTTTCATGTTACTTAACAAGACACCGAGGAAGGAACTTGAAAAACTAAAGTTGGCCTGCCATCGTTtgcaagttgcaatccatttctcTCCTGGCCTTCTGTGGCCTTTTACACTTGTTATCTGTTTCCTTGGGACActatattatttttatgttaagGTTTCTATTGGTACGAACATgtttttggctcattttttcAGTGCGTGTTACTTAAAACAGCTGACTCAATCCCTTAATGTGATCAAAAGCGGAAATGCGGAAACTAGTGGCAAAGGAATGAATATAAGGTGCAAAAACTATCTACTTTAATACtaatgaaaagaaaatcaaaacaaacgaaaacaaaattgcCGGGAAAACATGAGGTCTAACAAGACGGTATTAACGTCATAACTGGCAAGAGATCACATTTAACAATTAATTTAGGCAAGTTGATGACAAACATAGCGCTCTTAAAATATAATCTCAGATAGAAATCACGTACAATATTAACtattctttagaaactaaacaAGCAGGTACATATTATCCATTCAAATTTAACGACTTTAACAAGCCGCAGTCTTTACCCGCACACCTGATCAGAAAAACGCTCAGGCTTCTTCCTTTATCCTCAGATTGGATGTGATTTTTGTAACCCAAGCACAAGACTAAGGTCATCATTTATTGTCATGGTTGTTGTGTTGATAACAGGAGTGTGCGGAAGCGGGAAGTAAGTAATTTAGCTATTCTCACCACAAAATCAAATTCAAGAATGCATCTAGCACAGACAAAATTCTTAGTGTCCAGCGAAAGTCCCTTTTAAGGGCCGATTTGGATGGTACAACATTAACTCTCacatgcgacttttgtagctcACACTGCTTGCATCATGGACTTGCTTTTACCATGCCTACATCTTGCATCACATCATCTATATCAAACCTACAACAGAGTTATGACAGATGCATGGCAACATGAAATATCGTAGGAttacaaaactatttttttgAAAATCTATGATAATCATAGCTGTGAACACTGCTACAATATGACTGGAGTTGTGTATGATTTTTACATTGCACATGCAGCATGATCTACAGAAATTGCTTGTGTCAGTTGTACAGTATGTGAAAATCTTACTTTCTTAATAGGCCCTGAGGTTGAGATAAAGTTGGGATATTGATATCTAGCAAGTATAAGTGACACATGAGGCAATGGAGTTCTTAGTGTCTCCTTTCCTGTCCTCTGCAGAATTCAAGGAAATGTCCGATTTTAAGAGAGAGGAAAGAGATTGCAAGTTTACTTTCATTTCAGTAGAGGATGAAAACTTAAATTATTATGTTGTTATCATTGATATTTGATTTAATCTTATTTTTTGAAGTATTTGTTTCAATATTTCAAGTGCATTCTCACTTTCTAAAGTGTGTCTTCATTAATAGTTAGGTCTTGTATGATGTAAGTGTAAAGTCTTTGGGGCGTTAGTGTACTCATTCTCCCTGTTGTCATGCATTGATTATCAAATAATCAAATGCATCAATTGCATTGATCAGTGTGAGTCAAAGAAGTTTTATAATTTCAGATACCTGAAAATAGATAAATCATTAAATACAAGCTTTGATTTTAGGAGGTACTAGATGCCAATCACTGTAATAACTGGAGCTAAATATTATGAGTTTACCTCCTAgtatcattttcatttttctttgtagAACCACAGTGGCACGGGCCTTGGCAAAAAAGTTATCATGTCCATATGTGGATGCAGATCATTTTCATTCAGAGGGAAATATTATGAAGATGAAGCAAGGGACCCCCTTGACTGATGAGGATAGACAGCCCTGGCTTCTTGCCTTGAACAAGGTCATTGAAAGGTGGAGCAAGCGATCTGAATCTGGAGTTCTTGCTTGTTCAGCTCTCAAGGAACAGTACAGACAAACTATTATTCTTGGAGCAGAAGCCAGCTCTGAAAAACAAAGATACTGTTCAATTGGAGACAACAGACAAAAAGTATCACGGCCGTTACCATTTTACTGCCTTGTTGTCCTACTTGAAGGCCCCAAGGATTTAATAAAGGAGAGAATGGAAAAGCGGCAAGGACATTATATGCCTGCAAACTTACTGGACTCACAGATTGAAATTCTTGAGGAACCAAACAATTGTGAATTGTACTCTGCGGTTAAGGTCTCAGTTGATCAAACTATTGAGGAAATCACTAATGAAATTTTACTAGCTTTGAAAGCTAAATACGGTGTGAGGGTATCAATACACAGTACTGTCTAAAGCATGTAGGAGTTAGCTTATTCAAAAGGATTCACCAAGCTCAAGGAAGGCCCATTGCAGTAAGAAGACAGCAAGTTAGGACAGAACTTTCCTAAAGCTTATTGCAGATACATCCTTGTAATTTTGCCTATAACCAGGTTTAGTGATTGTCGTACGGATACTTTGATTGATACTTCTATTGAATATTACATTGGTTGCAGCCATCAAGCCAGAAGCATTCCTGGGTGTGCTGTGGAAAATCAGTGCCAGAAGCATGTCTGGGGGAACCTGTAAACAGGCAGTTTATGACTAAATCCTTGGAAAACTTACACAAGCTTTATTTGTAGGAGAATGTGTTTCCAGGATGGCCTTCTTTAATTTCGTGCTAAAAGGGTTATTAAGTGAAGTTTTGGTGCAGAGAAGGGAATCAAAATTAGGATGATGTGTAATGTCGTGGTTTAATTGTTATGTGTACAAAAGAcataaaatgttttatttttcagttataaaaaaagtttttttataCCATAGTTTCTCCAATTTGAAATGCCAAATGCATTTATTGTAAACTGAGGTCCTTCAAGGGAGCATTTAGTAAGGAAAAAACAGCTTCCAACAATAACTGTATATTCCTTCCTTAGAGACACCTGAAACATCAACTTCCAGTTTGATGCCTCAGCAGGGGTTGTTTATTTAAGATGGGCTTAAACAAGAGGGGGTGTTTTTTCGACATAATTATACAAGAATTTCTTAACAGCATGTGGGAAATTGTCTTAGTTTAgttattttttaaatgtttaattatcAGTATCAAAATGCTGATACAGTGTATCTGAAGATGCATTTTTAAGACAGACTTTTGAATAATTAATCGGTTGTTTCAGAACCACACAACCTACATCAAGAGACAAGAATTATGTTTTGTTGTCTCATGCAAAGTAGTGGAGTGGTTTGCtgtaaaagcaaaattttgtagttaatcacatgtaaaattaaataatttttgttaaaGTTAATACAGCTaatgaagtcttgctgtaaaAGATTGATTACGGTATATTACGAGTACACATTTGATAACAAGATGGTTCAGCAAAAAATATATcattaaatgaaaatgaaaatgaaaattaaagcCAATGAAAGCAATCAAGTTGCTTGGTTTGTCAATACATTCGTTTGGGTGTCTAcgtgaaccctttaagccctgataaaaaaatgcatattcttcttactgttttccatagtttacatttcttatggaaatagcaaggagaatttgtctaaaatatatcaagac

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01202 all species →	SKI	Shikimate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006001 all species →	Family	Carbohydrate kinase, thermoresistant glucokinase	Interproscan
IPR031322 all species →	Family	Shikimate kinase/gluconokinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43442 all species →	GLUCONOKINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0046177 all species →	Biological Process	D-gluconate catabolic process	Interproscan
GO:0046316 all species →	Molecular Function	gluconokinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_032908-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.