Detailed information of FUN_032993-T1 in Siderastrea siderea

Genomic Location: contig_35:3720677...3726391
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00560
all species →		LRR_1Leucine Rich RepeatRepeatInterproscan
PF08263
all species →		LRRNT_2Leucine rich repeat N-terminal domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR001611
all species →		RepeatLeucine-rich repeatInterproscan
IPR002049
all species →		DomainLaminin-type EGF domainInterproscan
IPR013210
all species →		DomainLeucine-rich repeat-containing N-terminal, plant-typeInterproscan
IPR053211
all species →		FamilyDNA damage-repair/toleration-associated proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48060
all species →		DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04855CACNA1H, CAV3.2; voltage-dependent calcium channel T type alpha-1H-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_032993-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
38TPM > 0
7Conditions
37.2Max TPM
3.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 9 4.52 37.20
holobiont · low.pH Control.temp 20 2 1.29 22.83
holobiont · control.pH_high.temp 20 10 3.43 27.20
holobiont · control.pH Control.temp 19 11 4.45 30.17
Whole organism 4 4 1.16 1.80
unannotated 1 1 0.07 0.07
live coral tissue/skeleton 1 1 0.40 0.40

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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