Genomic Location: contig_118:369985...415221
NR annotation: XP_020611629.1, uncharacterized protein LOC110050097 isoform X4 [Orbicella faveolata]
| CDS | |||||
| FUN_033005-T1 | |||||
| Transcript |
| FUN_033005-T1 |
| Protein |
| FUN_033005-T1 |
| Uniprot term | Description |
|---|---|
| Q99715 | Collagen alpha-1(XII) chain OS=Homo sapiens OX=9606 GN=COL12A1 PE=1 SV=2 |
| P13944 | Collagen alpha-1(XII) chain OS=Gallus gallus OX=9031 GN=COL12A1 PE=1 SV=3 |
| Q60847 | Collagen alpha-1(XII) chain OS=Mus musculus OX=10090 GN=Col12a1 PE=2 SV=3 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00092 | VWA | von Willebrand factor type A domain | Domain | Interproscan |
| PF07648 | Kazal_2 | Kazal-type serine protease inhibitor domain | Domain | Interproscan |
| PF00095 | WAP | WAP-type (Whey Acidic Protein) 'four-disulfide core' | Domain | Interproscan |
| PF00090 | TSP_1 | Thrombospondin type 1 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002035 | Domain | von Willebrand factor, type A | Interproscan |
| IPR036645 | Homologous_superfamily | Elafin-like superfamily | Interproscan |
| IPR002350 | Domain | Kazal domain | Interproscan |
| IPR036465 | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR008197 | Domain | WAP-type 'four-disulfide core' domain | Interproscan |
| IPR036058 | Homologous_superfamily | Kazal domain superfamily | Interproscan |
| IPR000884 | Repeat | Thrombospondin type-1 (TSP1) repeat | Interproscan |
| IPR036383 | Homologous_superfamily | Thrombospondin type-1 (TSP1) repeat superfamily | Interproscan |
| IPR050525 | Family | Extracellular Matrix Assembly and Organization | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24020 | COLLAGEN ALPHA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005576 | Cellular Component | extracellular region | Interproscan |
| GO:0030414 | Molecular Function | peptidase inhibitor activity | Interproscan |
| GO:0062023 | Cellular Component | collagen-containing extracellular matrix | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K06238 | COL6A; collagen type VI alpha | - | Glycosaminoglycan binding proteins | ko00536 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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