Detailed information of FUN_033258-T1 in Siderastrea siderea

Genomic Location: contig_35:7569996...7603814
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16501
all species →		SCAPER_NS phase cyclin A-associated protein in the endoplasmic reticulumFamilyInterproscan
PF12874
all species →		zf-metZinc-finger of C2H2 typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR032446
all species →		DomainS phase cyclin A-associated protein in the endoplasmic reticulum, N-terminalInterproscan
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31434
all species →		S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUMInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_033258-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24869SCAPER; S phase cyclin A-associated protein in the endoplasmic reticulum-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_033258-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
85TPM > 0
7Conditions
3,156.4Max TPM
979.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 20 935.51 2,329.63
holobiont · low.pH Control.temp 20 20 1,324.91 2,552.83
holobiont · control.pH_high.temp 20 20 994.60 2,333.16
holobiont · control.pH Control.temp 19 19 943.04 3,156.41
Whole organism 4 4 52.78 60.64
unannotated 1 1 11.75 11.75
live coral tissue/skeleton 1 1 38.68 38.68

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP