Detailed information of FUN_033379-T1 in Colpophyllia natans

Genomic Location: contig_128:366033...382700
NR annotation: XP_020631420.1, DNA-binding protein SMUBP-2-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9EQN5DNA-binding protein SMUBP-2 OS=Rattus norvegicus OX=10116 GN=Ighmbp2 PE=1 SV=1
Q60560DNA-binding protein SMUBP-2 OS=Mesocricetus auratus OX=10036 GN=IGHMBP2 PE=1 SV=1
P40694DNA-binding protein SMUBP-2 OS=Mus musculus OX=10090 GN=Ighmbp2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01424R3HR3H domainDomainInterproscan
PF21138SMUBP-2_HCS1_1BHelicase SMUBP-2/HCS1, 1B domainDomainInterproscan
PF13087AAA_12AAA domainDomainInterproscan
PF13086AAA_11AAA domainDomainInterproscan
PF01428zf-AN1AN1-like Zinc fingerFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047187DomainUpf1-like, C-terminal helicase domainInterproscan
IPR001374DomainR3H domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR035896Homologous_superfamilyAN1-like Zinc fingerInterproscan
IPR036867Homologous_superfamilyR3H domain superfamilyInterproscan
IPR050534FamilyCoronaviruses polyprotein 1abInterproscan
IPR048761DomainHelicase SMUBP-2/HCS1, 1B domainInterproscan
IPR041679DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR041677DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR000058DomainZinc finger, AN1-typeInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR004483FamilyHelicase SMUBP-2/Hcs1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43788DNA2/NAM7 HELICASE FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0043139Molecular Function5'-3' DNA helicase activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19036IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2EC:5.6.2.5
EC:5.6.2.3
Translation factorsko03012deepkoala

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