Detailed information of FUN_033499-T1 in Siderastrea siderea

Genomic Location: contig_36:2187891...2192415
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13521
all species →		AAA_28AAA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR038727
all species →		DomainNadR/Ttd14, AAA domainInterproscan

 PANTHER
No PANTHER signature was detected for FUN_033499-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
No Gene Ontology signature was detected for FUN_033499-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_033499-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_033499-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
52TPM > 0
7Conditions
923.6Max TPM
128.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 9 69.52 327.24
holobiont · low.pH Control.temp 20 12 172.02 595.96
holobiont · control.pH_high.temp 20 8 68.95 409.97
holobiont · control.pH Control.temp 19 17 232.16 923.58
Whole organism 4 4 36.76 64.15
unannotated 1 1 61.32 61.32
live coral tissue/skeleton 1 1 67.92 67.92

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP