Gene detail

Detailed information of FUN_033512-T1 in Acropora pulchra

Genomic Location: ptg000023l:42838892...42847436
NR annotation: XP_029179659.2, cytochrome P450 27C1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_033512-T1

GTCGTGCGATCTCCTATACTAATTCTTGTAATTATGAGCCTTACTACGGAACCCCTCTAGAGAGGGGGCAGTGGATCGATTGCCTGATAGCCCTTCAGTCAACGCCGCTTTCTTCATTTAGAGGATGCCTTCTGCGAAAGTAAGCTGGGTCGGTGTTGGAAGAAATCCTTTTAGAATAACTCAGAATTTCAAAAGTCTAGGTTCTTTATGTCTATGGCGCTCAAAATCAACACAAGCAGCTTCCCAAGAGGCGAACTTTGATTTGGGTGATTCCACAGAGATCGAGGATTATGGCGAAGTTCGACCTTTCGACGACATTCCGGGACCGAAGCGTAGCCTGCAAAACCTGATCGCCTTTTATCGCCGAAGCGAAGGCCTTACCAAAAGTTACAAGAATTCGGAAGCTCTTTTCAAGGAATACGGTCCGATTTTCAAAAGCAATCTTACGGAAGATATGGTAATGGTCCATATTCTCGACCCAGATGATTACAAGAGAGTATTTCGAGCTGAAGGGAAGTATCCTCGAAGACCTCTCCTGGATTTCTGGGTTGAGCATCGGAAAAGGAGGAATTATTTTCCTGGATTAGTGCTTTTACAGGGAGAAGAGTGGCAGAGGGTCAGAAAGAGCATTGCTCCTAAGATGATGCGCTTGAAAACAGTGCAAGAAAACATTGATAATTTCCATGCTGTTACTGAAGATGCTATTATGAGATTTACAAAACTTAAAGAAGCTGGTAGGGGAAATGGTCACATTCCAGACTTGGAAGAGGAATTGAAGAAATTTTCAATGGAAAGTATAGGGACAGTTGCCTTCAATACACGACTGGGACTATACCAAGACCCACCTCCAGAGAAGGCACTGAAATTCATCGAAGCAGTTGATATGTTCTTCGTTCAAACTCAGAAAATGATGACAAGTCTGCCAAGTGCAATGATGCGACGGTACATTGAGACGCCAGCTCTGAAGAAATTCTTCAAAGCTGCAGACGATATTGTGGACATTGGCGAATATTTTGTCAGCAATAAAATGAAGGAGCTTAAAGAAATGTCAGAGAAAGGTATCGAGCTCTCAGATGAAGTGGTTCCCGTGTTGACATATTTACTCACCACACAAAACCTGAGTCTGGAGGAAATCAATGGTTTGGCTATTGATGTTATTGGTGGTGGTGTTGATACAACAGCAACCACATTGTTATGGATGATGTATCATCTCGGTAGTTATCCGGATGTACAAGACCAGCTTTACCAGGAGTTTGAGAGAGTTGTTGGGAAAGATGGAAGTATCACATCAAATAATATTGGCAAGTTATCCTTCCTCAAGGCTTGTCTAAAAGAATCGATGAGGTATTGTGTCTTATTCTTATTAGTATCACCCAACCAGTGGACTAATGCAAATCATGCATTTTGATTGGCTACGCTACTGTAGCTCTATCAGTAATAGTCATCGAGCGAAGTTCGCCGGTTTTGTAAACCTATTTATTTCGTTTTATTCCCAAATAAATATATTTTTTTTGCTGAATTTATTATTGCTTTTTTCTCTCCGACTAGTTGGGTGATACTAAAACAATTAGACCCTTCGCCACGGATCAATAGCCCATTCAGCTTCGCCTCATGAGCTATTGACCTGTAGCCCTTTCGGGCTACGGGTCTAATTGTTAAATAATTACAGAATTCAGCAATCCAAAATGTACATTCATATTGGTAGTATCAAGAAGCAATTTTTCGAATTTTGCCCATCCAAACTGACCGTTCGCTGTGTTCTCATTAAACCGCTTTAAACGAAAATAGAAATGTACGAAACGAATTGAAATTAATGACTTCGAATTTGATCTTTTCACGTTGGTATTTTAACGGCGTCGATCTAAGGAATACGCGACGGACGTTCTAAACTCCAGTTTATTCGTGGAATGCACCTAGGATACAACTAGGTAAAACGTTGGTGCTCGCTTTTTCCGTTCTGAGCATCGACACCGTGATTAACTTTAACAAAAATATAAGTCTTGAAAACAATGGCACCAATTTTTTGAAAGCATTTGCTTCCCCAGTACGCGAGGGACGATAAGTGGAAAAGGCGAAAACCGCTGACTGAAAACAAAATTAAACGTTCTGAAACGGTTATTGCTTGAATGGATACTCCAAAATATGGTGAGACACTTCGTGACACATAAACAGGTTCAAGCAGATAAACGACACCCTATTTACGCAGAGAATAACTGCTGGGTCAGCCACTGATCTCTAGTGATTAGGTCTAAGCGCCGGCTCGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0DOX0	Cytochrome P450 27C1 OS=Aquarana catesbeiana OX=8400 GN=cyp27c1 PE=1 SV=1
A8WGA0	Cytochrome P450 27C1 OS=Danio rerio OX=7955 GN=cyp27c1 PE=1 SV=2
Q09128	1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Cyp24a1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000329 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR050479 all species →	Family	Cytochrome P450, families 11 and 27	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24279 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16646	ANXA5; annexin A5	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.