Detailed information of FUN_033612-T1 in Siderastrea siderea

Genomic Location: contig_36:3361225...3365954
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008695 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for FUN_033612-T1 in Siderastrea siderea.
 InterPro
InterPro termTypeDescriptionSource
IPR033336
all species →		FamilyStabilizer of axonemal microtubules 1/2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31516
all species →		STABILIZER OF AXONEMAL MICROTUBULES 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005856
all species →		Cellular ComponentcytoskeletonInterproscan
GO:0008017
all species →		Molecular Functionmicrotubule bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_033612-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_033612-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
22.5Max TPM
1.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 17.54 22.50
unannotated 1 1 11.34 11.34
live coral tissue/skeleton 1 1 22.48 22.48

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP