Gene detail

Detailed information of FUN_033779-T1 in Acropora pulchra

Genomic Location: ptg000024l:1295528...1304902
NR annotation: XP_044184565.1, putative ammonium transporter 1 isoform X2 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_033779-T1

CTGTTTTGCTCTCGTCCTTGTAGTCATTTGACTATTTCTTACCTTTTATAAAAGTACTTTCTTGAGTTCCTTCGTCTCCGGAATTCAAACAAAAACTGGAAGGCGAGATAGCCTCTGAAAGTGGTGTGTCCGAGATGGCGTTTGAGGATCTTCGTTCTACGGTAACAGTTCTCCACGCCAACGTCGACCAAGCTTTTTTAATATTCATGGGCTGCCTCATATTTTTCATGCAAACGGGATTTGCATTTCTGGAGGCCGGATCAGTAAGATCAAAGAACACGACAAATATCCTCATAAAAAATGTATTGGATGTCTTCATGGGCGCTGTCGCTTACTGGCTCTTTGGATATGCATTTGCATTTGGAGCAGATGGCAATGGTTTCATTGGGCACAAGTTTTTTGCATTAGCTGACCTACCAGCTGACAAATATTCTCACTGGTTTTTCCACTTCGTATTTGCTGCTACTGCGGCGACAATTGTCAGCGGTGCAATGGCGGAGAGGACCGAGTTCAAGGCTTACCTCGTGTACTCGTGTTTCTTGACGGGATTTGTATACCCAATTGTCACTCACTGGGCATGGGATGAAAACGGCTGGCTTTACGCTGGTGTATCTTATTCCTCCGGGGACGCTGTAGCTTATCAGGACTTTGCAGGTAGTGGGGTTGTTCATGCGCTTGGTGGGACAGTTGCGTTAGTTGGAGCAGCCATTGTTGGCCCAAGAGTGGGAAGATTCAGTGCTGATGGCAAACCGCAAGTGTTACAAGGGCACACCGTACCACAAGCAGCTCTGGGTGGATTCATCCTGTTTTTCGGCTTCTTGGCTTTCAATGGCGGATCGCAAGCAGCTATTGCCAGTGAAGGAGATGCAGATGTCGTTGCACTTGCTATCGTAAACACGATTCTTGGAGGAGCCGCTGGTGCCTTGACCGCCATGATGATCAAGCGCCTGGGTTATGCTGAAAAATACTGGAGTCTTCTGTTCACGATCAACGGCGGACTGACTGGAATGGTTGCATTGTGCGCTGGTTGTAACGCTGTCCACCCCTACGCTGCGTTCATCATTGGTATTATCGCAGGGATGGCTTATGTTGCCTGGAGTACTGCTATGCTGTATTTCAAAATCGACGATCCTCTCGACGCTGTGGCTGTTCATCTTGGTGGTGGAATCTGGGGAGTGCTGTCTGTTCCCATCTTCAACAAGGAATCTGGTATACTGTACACTGGAAGTCTGCTCGCTTTCCGTGGTTTCGGTTGGAATATTCTCGGTGTGCTCGCTATCATGGCGTGGTCAGCTTCTCTTGCATTCCTGTTGTTCATTATTTTGCATCTTACCAAGCAACTCCGAGTTCCCGAGGAAATTGAATTGAAAGGTGGGATACAGTATCAATCGCGTTTATAAGGACCTTTAGATTCTAGGACGAGGAGGAGAATGAGTACGAGATTTGACTGCCCGTTTTCAGCGAAAATACTTAGAAAATTTTTAACCCGGACGATTAATCTTACTCTTTGTTAGAAATACTCTATAAGTTGATTTGCTATTCTTATTGCCGGGAAGGGAACCTTTTTGCTGATCGAAAAATGCCAAAACTGCTACCGTGTTTTGACACGACAATATTTTGGTAAAACCTCGTACTAAAATGAAGACGGTATCACTTTTTATGCCGCCAAAATGATGCTGGTTTGCGCACGCTCAATGTTGTTCTATGAGAAAATCTCTTACTCCTCTACGTTCTTGTCCTAGAATCTAAAGATCTCTAATATCAAATAAGGCAGCGAACGTTGTCAAATCAACACACTTCCGTACGTGCTCGTTTGTGTATACGTCAGAAAGTACCTTCAAGACGTACAAAGGATAAAACTCAATACTTTTTTGAGGGATGCAAGACCGCAAGTCGTCACCAATAGACCGTATTCATAAATGACAGCTAAGTAATCATTCTTTTGTCTTTAGGCTAATCATCCTAACTAGCCTCGTTAGCACGAACAAAATTCAAAAGAATTCTTGCTTGAAAGTGAGGCTAGTGGGGATAGTTAACCTAAAGACAAAAGAATAATTTCTTCGCCGCCATTTATGAATAAGGTGTATGATTATGAAGAAGAGGCAGGTCAATGTGCAAAATATGGCCTTTAAAACTCATGCAAGACTTCTTGTAACGGAGATGCAGGTGATTCCGTTGTGAGTCGCAATACCACAAACACACACAGACACATAACAGAAAAGACTTATTTCTAACCTATAAGCTCCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54145	Putative ammonium transporter 1 OS=Caenorhabditis elegans OX=6239 GN=amt-1 PE=3 SV=1
Q9FVN0	Ammonium transporter 1 member 3 OS=Solanum lycopersicum OX=4081 GN=AMT1-3 PE=2 SV=1
Q6K9G1	Ammonium transporter 1 member 2 OS=Oryza sativa subsp. japonica OX=39947 GN=AMT1-2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001404 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00909 all species →	Ammonium_transp	Ammonium Transporter Family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001905 all species →	Family	Ammonium transporter	Interproscan
IPR018047 all species →	Conserved_site	Ammonium transporter, conserved site	Interproscan
IPR024041 all species →	Domain	Ammonium transporter AmtB-like domain	Interproscan
IPR029020 all species →	Homologous_superfamily	Ammonium/urea transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11730 all species →	AMMONIUM TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008519 all species →	Molecular Function	ammonium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072488 all species →	Biological Process	ammonium transmembrane transport	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0097272 all species →	Biological Process	ammonium homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03320	amt, AMT, MEP; ammonium transporter, Amt family	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.