Gene detail

Detailed information of FUN_033979-T1 in Acropora pulchra

Genomic Location: ptg000024l:3319956...3336714
NR annotation: XP_029189907.2, sodium-coupled monocarboxylate transporter 1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_033979-T1

ATTTCAAATTAAAGGAAATGAAACAACAAATTAATTACTACTCCTTGACGAAGTAGGACCACGCCTAACAAAATATTACATGCAATTATACACGAACAATCCTCACAGCCATCCCGTCAGCCGTGTTAAATTATTTTGTTTGCGTGACAAAACACCTTTTCCAAATAAAAGCTGTCAACTCCACTGATAAAGAACTACTCGCAGTGTAGTTTCACGCAAAGGCAAGGGAGGTGATGTATGCCCATGCCCCTTAATGACTCGCTTTAAGTGCTTTCTAGATTTGCTTAATTTCGGTAAATTGTGCAACGCAGCATGAAGAATATTTGGCGGGAAAACAACAAAGTATTCATGTCAAGCTTCAAAATAAAAATAATCAATCTTCGATGTAGAGGGCAGTTGATCTTTAGCTTTACATCTCCGAAAGAGCAACACATACGGCGAAGATATACGTACCCTGCAATAGCCGGCACTTAGCGTTGCGATAGCATATATGCGCCCCATATATAACGCCTGTTGTGTAGGCAGGCATTTATAGACAATCCGTAGCTAAAATAACCATACAGGACTTTTATTCTGTAATATTACAATCGACTGTTGTTGTTTCAAAAGGCAAATTGTGGTTGTATTCCTTTAAAAGGGCGAATATTTATACACATATTACCGAAGTCAATAGACCTCGTAATATTATTCAATGCATTACAATGGCCTATTATATTTGGAAGCCACCGCATACGGAACCTACTATTTCCTTGCCAAAACGGTTAAGCTCGTGAGGACATTTCCTTCAGTTCCTTATTAGAGCACTGCATTGATCCACAGTCTAGTACGTAATGTGTAGTTAATGCTACCGCGGAAGGCAGTCACATAGAGTCAGTAATTTGATATAAGCGCGAGCCATTAAATGCAATTGAAATAAGCGAAATGTGTGAATACTGGCCACAACAATACTGCGGTAGAAGTTCCTTTGGCTGAATGTTTTGGCTGAATCTTACCGGCAATGTTTACTATTATCGCTGAGGCGTGACCGGACTCAGAACTTAAATTTCCATAAATTGCAGCTAAGTGAATGGTCACATATCGTGTTTCACTCACGTACAAAGTATTTTCTTTCTCAACCTTACTGCTTTAAAGCCTTGTTCTTCCACAGGTGAACACGCCTTTAAGCTATGAGATGAAAATTACTAACATCCGTCAATTTAAACTTTTGAACTCCAAACTTGTCAGTTTGAGATGAGTTAAAAGAACGCGCGTGAGGATTGTAGAAAATGTTCTAGGTTAAGGTTATTTTGTCCTCCACATAACTCTTGCGACGGAGTAAATCTTTCTTTCGATCGAATACGATTGCTTCTACGCACGTACGCGCACGAAAAACCCGAACGTGCCGCCATTTCAACCCACACCTCTTACTATCACTTGTCACGCATTATTATTGTTACATCATATAGTGATGAGTTTGTAGAGAAGTGTACGAAAACGTTTTGCGACAATCAAGTGCACAACATATGTACACAATGTGGATTGGTGTAGTCACAGGATTAGCTTAGAGATCCTAATCTTTGTCATGTCATGCAAGTTCGTGACATTTCTTGAACAAACTGATTTGCATAATCGCAGTGTTGCGTTAATAATAGCGTCTCTGGCCGGCAGCAGTAGCCGCTTTGTTAGAACCTCTAAGCGTTTCATGAGCAACTGATCTCTCAACTCGACATGGCTAACGATCGCTTCTCCGTTGTCGATTACGTTGTTTTCTCCATAATGTTATTGATCTCAGCTCTCATAGGAGTATGGTACGGCTGTGGTCCTGGAGGAAAACAAAAGACGACATCCGAATATTTACTGGGGAATCGAAAAATGCGGCACTTTCCAGTTGCGATTTCTTTATTGGTCTCATATCTTTCTGCAATCACATTGCTTGGGGTTCCATCTGAGATCTACACCTACGGTGCTCAGTATTATGTCTTGATCTTGTCGTATTTCATAATTTGTGGCACTGTAGCCATAGTCTTCGTCCCGATGTTCCGCCGTGTGAATCTAACTTGCGCTAACGAGTACCTGGAACTGCGCTTCTCGGTTGGGGTCAGAATGGTGGGATGTGTTTTCTACCTTCTCGAATATGTGTTGTACCTGTTTGTCGTTCTCTATGCTCCTTCTCTTGCTCTGGAGGCGGTCGCTGGGATCCCATTATCAGCCTCGATTCTTACAACTGGATTAGTCTGTACCTTCTACACCACCCTTGGAGGTCTCAAAGCTGTTATATGGACCGACGTGTTTCAGTCCTTAATTATGATTTCTGGCCTCATCGTCGTTGTAATTGTTGGCAGTCTTGAAGTTGGTGGTTTCGGCGAAGTTTGGAAAATCAACAAAGAGTTTGGCCGACTTGATTTTTTCGACTTTAACCCGGATCCAAAAGTGCGCAATACATTCTGGACATTGACGCTTGGTGGAGCTTTTACTGCGATGCCGGTTTGGACTGTCAGCCAGTCAGCTGTGCAACGATTTCTTGCCATCCGCACATACAAAGATGCTAAAACAGCTGTGTGGCTAAACGTACCAGGTTTGATAATCATCGTGACGCTCTGTTTTTTGGACGGTCTTGTTATTTTCGCTGTTTACGCTGGATGCGATCTGAGAGCGGCCAAGAGGATCACCAGTAATGATCAGACCCTCCCATTTTTCGTGATAAACAAGCTGGGCCACCTGCATGGGCTGCCTGGAATGTTCACCGCCTGTTTGTATGCTGGAGCTCTTAGCACCGCATCTTCAGCTCTGAATGCTATGGCTCTTGTCACTTTGGAAGATATCGTCAAAAAGAAAGTCCCGGATATAACTGACACTGACGCCGCCAAACTCTGCAAAATAATTGCTCTCTCTTTTGGTATTATTGAAATTGGAGGAGCCTTTGTGGTGAAGTACGTGGGCACGATGGTTTTACAATTGGCGTATAGCATCTTTGGAATCTGTGGGGGTCCACTGTTGGGAATATTTTTACTTGGAATGTTTGTACCACGAGCTAATTCCAAGGGAGCTTATTTTGGAGTTTTTACTGGTGCTGCGTTGACAACCTGGGTGTTTCTTGGTTCAGTTTTGCTTCCCCCAAACAAGTACCCAGGCCTCCGCTCGGTTCGTGACTGCGACTTCTTCAATTCGACGACTTACAATGGCACCATCAGCCTCAATAATACTGCAGCCGCTGACCAGTGGGATGAAGACGGCTTTATCAGAAACCATTACAAGGGCCACAGTGCACCCATTGCAGATTTCTACAGTATGTCGTATCTCTGGTTCAGTGGATTGTCTGTTATGGTCTCCTTTGTTGTTGGCGCTGTGATGAGTCTGATTCTTGCAAGCAAGGAGGACAAGGAAAGGAAAATTGACCCCAAACTGCTGTTTCCGGTGAAGGAGTGGTTTATGGGTTTTCTTCCTGGTCATACGTTTGAGTGGGACTTTGTGGCAGAAGAAGAGGAACGGTTAGCAAAGGCCGCAGAGCAAGAGATGATGCCGATACACGAGAAGGAGATCAAGGTCAACTGGGATGATACTCCACATGTTAATAACGCAGAAAACAAGAAAGAGATTGGGGACACCTTCGCCGAAAAACTCCTAACGAATGATACCAAAATGTAAAGTCGTTGTATTTTCTCAGTTTTCTTCCTTTCTTCTTAAATATTGCGTCTTTTATTAGAATTTGGTTTCACTACAGTATTTTTAAGAGTGTTGGGTATATGTTCTTTTTTATTAGATACCAGAAATGGCAATACGATTCCTTATTCTTTTAAATATATCAAGCGAAGAACATGATTTTGTTCAATTTTCTAATTTAGACTGGCGCAGCCAAAACCAACGTTTTACGTTTGATATTGTTTCTTTCGTTTGTTGTTGCCTAGCTCCGTGATTAACAGATCAAAGGGAGTTTAGCTGAAGAAGTTTTTAGATATCATTAAAGCGAAAGTGTGTGTTATAAATATAACCTAAGGCTTCAGGTAGAATTAAAAACATCAAAAATTGCCTAAATATCTACTCATTTCACCTATATCGAGCACACCTTCTTTGGATTCGTCAAGCAAACGGTTTGAGAAGATTTCGTGAAAAGTGAAATCTTTCCTTTTATACCTAATGTGTTGACTAGTATGTGAAAAACGTTGTAAAAATAAGTGCACCAAGATTCTTCCTACAAAGTTTAAGTAGTAAATTCGTTTCCTGGTACAAAAGAGTTAATATTGTTCCATAAAAAGGATTTGGGTAATAATAAAATGGAGGCTCTATCATTCTATGGTTGTATGGTTATATTTGGTGTTTTTTCGAGCGGCTTTCTGCACACAACACCTCTAAAAAATTTGTAAAATACATTTTGACATATTTTTAGAATTGGCCAAAAAGTAAAATTGCAAAAAACATGTCAAAAAAATTCTACAAATAACTTAGAAATGTTCTGTGCAAAACACAACTCCAAAAAAAAACTATTCCAGAAAAAAACACCAAATATTCGAGAAATGAGACCATTTTGAAAATCGGCCATCATGCAAAGGCTATAGCCCATGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O70247	Sodium-dependent multivitamin transporter OS=Rattus norvegicus OX=10116 GN=Slc5a6 PE=1 SV=1
Q9XT77	Sodium-dependent multivitamin transporter OS=Oryctolagus cuniculus OX=9986 GN=SLC5A6 PE=2 SV=1
Q9Y289	Sodium-dependent multivitamin transporter OS=Homo sapiens OX=9606 GN=SLC5A6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474 all species →	SSF	Sodium:solute symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001734 all species →	Family	Sodium/solute symporter	Interproscan
IPR051163 all species →	Family	Sodium:Solute Symporter (SSF)	Interproscan
IPR018212 all species →	Conserved_site	Sodium/solute symporter, conserved site	Interproscan
IPR038377 all species →	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42985 all species →	SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan
GO:0015293 all species →	Molecular Function	symporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14386	SLC5A6, SMVT; solute carrier family 5 (sodium-dependent multivitamin transporter), member 6	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.