Detailed information of FUN_034010-T1 in Acropora pulchra

Genomic Location: ptg000024l:3666466...3670920
NR annotation: XP_029185099.1, calcium-regulated heat-stable protein 1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9Y2V2Calcium-regulated heat-stable protein 1 OS=Homo sapiens OX=9606 GN=CARHSP1 PE=1 SV=2
Q9WU49Calcium-regulated heat stable protein 1 OS=Rattus norvegicus OX=10116 GN=Carhsp1 PE=1 SV=1
Q9CR86Calcium-regulated heat stable protein 1 OS=Mus musculus OX=10090 GN=Carhsp1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008358 (this species only)
Transcription factor familyCSD · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00313
all species →		CSD'Cold-shock' DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002059
all species →		DomainCold-shock protein, DNA-bindingInterproscan
IPR011129
all species →		DomainCold shock domainInterproscan
IPR019844
all species →		DomainCold-shock (CSD) domainInterproscan
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR052069
all species →		FamilyCalcium-regulated mRNA-binding domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12962
all species →		CALCIUM-REGULATED HEAT STABLE PROTEIN CRHSP-24-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0003730
all species →		Molecular FunctionmRNA 3'-UTR bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0043488
all species →		Biological Processregulation of mRNA stabilityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_034010-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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