Gene detail

Detailed information of FUN_034010-T1 in Siderastrea siderea

Genomic Location: contig_37:526301...559829
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_034010-T1

ATGTACGGATTGACGAAAGGAGGTTACAGCGCACAATTTAGATTATTATGGTCTACCCAGCTGAAAATTGTCCATTTCACAACCAAGATGGCGCGTCCTCCGCGTCGCCATCGGACCGATCGGGGACCTGCGGTCCAAGAAGAATGGCAAATGGCTCGGACTTGGCTGAGCAGTTTAGGAGTTTTACCGGACTTCCACAGAGCTTCATACCCAAATGCATCCGTATTTGATCTCGCACAGTGCCTTCGAGATGGTGTGGTGTTGTGCCAAGTCGCTAATCGCTTGCGTCCTCATTCTGTTCCAGACATCAACATGAGACCCCAAATGTCTCCGTTTTACTGTATGAAGAATATTCGAAGTTTCTTGACGTCCTGTTCGCGGGATTTTGGCGTGACTAACGAAGCACTATTCGACGCAAGCGAGCTTTTCGACGTGTCTGATTTTGCTAAGGTGATCAAGACTCTTTCAGTTCTTTCTCATACTCAGTATGCCATTTCAGCAGGATTTGAcCCCTTTCCACCCGACGATTCTGGGCCTCATGATATTCAAGATGAGGACATTTATTCAAACCTCGAAGATCTTGCTTTGAACCGTGATATAATTGATGAAGAAAACCCCTATGATGCAGTGACCATTGAGGAAAGTACGAAAATTTACGAAGACCTTGTTGCTTATCAGAAAGTTCCGAAACCTGAGCGTCAGAGCTCGGTAGAAGAGAAGAGGAAGTATGTTGTAGCAGAGATACTCGAGACAGAGAAGAGTTACGTTGAAgcccttaaaatgattcaagaGtattttataaaaaaattacaaatatcACCTGATGACAAGGCTAAGATCTTCATCAACATAGAGGAGTTGTGGAGGACCCACACCAAGTTTGTGAAGAAACTGGAGAAAGCTTGTACTACTGATGGAGGAAAGGAAATCAGTCCTGTTTTTGTAGAATTTAGAGATGACTTACTAAAGTATGGAAAATATTGCACGAAAATGCCAGAGGCGCAAACATATATTGATTATCTTTCAAGAACTGATACCAAGTTCAGAGAAGCATTAGAGGATTGCCAGAGAAGAGCAAATAGCAAGTTTGCATTGAGATCTTTGTTAGTAGTTCCTTTTCAACGGGTCTTGAAGTACCCTCTTCTAATACAGGAGCTTAACAAGCAGACGAAATCAAACCATCCGGACAAGAAAGGTCTTGAAAAGGCCCTGGCAGCTGTTCAGGATGTGGCAAGATTTATCAATCAATTGAAACGTGATGATGAAAACTTGAGATCTGTTCAAGATGTCCAAGAAAGCTTGAGCAGTGAATTGGATATTCAGTTAGTTAACTTTGGTCATCTTCTTAAAGATGGTGAACTTCTTATTAAAGTTAGTGATCAGCCACCAAAGAAAAGGCATGCATTTCTTTTTGATACAGCCTTGATTATCTGCAAAACAAAGGGCGATACTTACCACCACAAGCAGTCCCTGCATCTGCAATATTTTGAAATTCAAGATGTACCTTCAAATACAGTAAAGAATAATAAATTTTCTCACAGTTGGCATATGAAAGAACAAGGTGACCGTAACTCATGCGATATGTCAACGAAAACACTGGACATGAAAAGCAAATGGATCAGTGACATTACAATAGCTATGGAAAATCTTACATTAAGGAATATTGAACAagGCAAGCACGAATTCCGGCTTCACACGTTTGCTGCTCCGACGTATTGCGGAGTTTGTGAAAATCTTTTGTGGGGTTTAATAAACCAAGGTTACAAGTgtgcaaTTTGCGATGCCAGCGCCCATAAAGACTGCATACCCAAGAGCAGCGCGTGTCGAGCGAGTCCTGGACTCCACAATCAGTTCCCCGGTACGTCACCGTTTCGCCCCCATCTCGCCCACAGAAATCCCTTTGCAAAGCAATCTTCATCGCCCGTTGCACCCACCCTCAGTCCTGACTTGTCCAAAGAGAGGAAAATTTCGGCGCCAGCAAGAATGCGATCAGGAACTCTTCCCCTTTACGCAGCGAGTTCAAATTTTGCTGGCTTGGCTCCTGGTGGTCGCCCAAATTTAACTTTTGTTGTTGGAGATGAAATTGAAGTGATCAACAGAACCGACCCTGAGTGGTGGGAGGGACGGTCAAAAAAGACTGGAGCGGTTGGTTATTTTCCTCAAAGCCACGTGACTTTGAAACCATCGTCATCCCGCTATGAAGAAACGACTATTAGGGAAGAAGTTAATTCGACTCCTGCGCCATCAAATTTGAATGCATCATTAAAGACTTTTAACTGGTTCGCAGGAAGGAAGGACAGACCGGAGGCAGAAAATGACTTGAATAACAAAAGCGACGGCACTTTCCTTATAAGGGAGAGTGTTAACAGAACCGGAGAATACGCCTTATCTGTCAAaTTTCGAAATAACGTTAAACATATAAAAATTCCATACGAAGATGGGGCTTTCTACTTAACAAAAGCAATATACTTTGGATCAGTCCAGgaACTAGTTGAATACTACAAACAGAACACGTTGGGTGTGAGTTTTCCAGGCCTGGACACAAAGCTACGGCATGGAGTGAACGAAGATCAGAAAGGAAAAGGCGTTGGTTGGGCCAAAGCCATGTATCCCTACAGCGCAAGGAACGCAAAAGAAATATCAATTCAGAGAAATTCCAGAATTCTTATACTCAACAAAGAAGGTGATTGGTGGAAAGGAGAATGTGACGGCCAGGTTGGTTACTTTCCTTCGAACTACGTAGAGGTTCTCAAAGAGAACATGGAAACAAAGAATTAA

Transcript

FUN_034010-T1

cagatttctgtgaaatttggcctaaaCTTTCTTTAGATGTTGTGAAAGAAAAGTATGTCGGGgagttttgaaatttataatatttcacccgtggcgatcttcaatgcaatgcccatcgcgctttctttgattctcgaacttgacagattaattaaaaaataaccagtcagaatatcgaaaaatgctgacacacttttgatgattgatcctttgggattaacactgtgcagttattttgccaatgcgcttggatttgataccctattaattcaattgaacgacacatggtcattttcaccGTTGATTGCGAGTTtttttttgcggaattgaagaaaccggaaatttatatttttttccgaaattcAGATTTATTAAGCTTTTCAACGATATAtaatttgccgtgttttcctttaaaatggcgcgcatacgaatcttttccccgaggacacccgcgaaggtccggagtaaccttaaacgTCGGTGTATCTCTCTTCCCAAAGCCCCTTTACAGCACTTCGTTCTCTATCTCACTCATTTCGGACACAAGGAAACTCACCAGGGAAATCAATTTAAGACACGaccctcgcccccccccccctcccttccaAGGAGAAGACACAGGCTGGATCTCCGAGGGGAGGGCAAACCCCTCTCGGTGAGTTGAAGCTGGTAATGTGCCTGACCTCCTGGCAACTGGTTGCACCACACAGTGGTTTTGTTCATGGCTGAATTATAACTTATTTAGTTTGCGATAAAAACGACGCATAATTTCAGGttataaaaagacaaacaaggGAAGTGTTAAGTGAAGCACGAGGCATATTCAGATATCCGGCACATCAATGACGTCATCCGGTTTTCATTTGTATCACTACTCTTAGTTACACTAAGAAAGCATGTATCATCCAAACAAATACGTCGAAGGATCTTTAGAAATCTCttgtcatgtaattttagagtCACTAGCTAAGTATTGGTAGAGGCATTAGTAGATAGGTGATACAGTAGTGacaattttaaaaaaggaagaagtcctgggaacgaggttggtaaCTGGCGGCTTCATTGACCGTTGACATTGGCTGGCTCACGTGCCAACCCTATCCAATTATCAAAACTGCCTGCTCAAAGGCTAATCAATGTTTTGAGGTCTTGAAATATGTTTTTTGTTGTATGAAACAGACATAAGCGAGTTGTAAGCTTGATTCACATGCAAACAAATCAGTGTTGTGCAAGCACAGGTGTGTAAGAGTTGCATACTACCGCCGTAAGCAGAAGTTGTGTAAAGAGATACAAGATTTTTTTCTCCAATGATCGTATTgtagttattttaaaagctctTATACTCGCGACGTCAATCTGCAATTCTGACGTTGAAATTTTTCTGGGAGCATAATCACTTCCGGTGAATTGTCACTCCCGGATGTACGGATTGACGAAAGGAGGTTACAGCGCACAATTTAGATTATTATGGTCTACCCAGCTGAAAATTGTCCATTTCACAACCAAGATGGCGCGTCCTCCGCGTCGCCATCGGACCGATCGGGGACCTGCGGTCCAAGAAGAATGGCAAATGGCTCGGACTTGGCTGAGCAGTTTAGGAGTTTTACCGGACTTCCACAGAGCTTCATACCCAAATGCATCCGTATTTGATCTCGCACAGTGCCTTCGAGATGGTGTGGTGTTGTGCCAAGTCGCTAATCGCTTGCGTCCTCATTCTGTTCCAGACATCAACATGAGACCCCAAATGTCTCCGTTTTACTGTATGAAGAATATTCGAAGTTTCTTGACGTCCTGTTCGCGGGATTTTGGCGTGACTAACGAAGCACTATTCGACGCAAGCGAGCTTTTCGACGTGTCTGATTTTGCTAAGGTGATCAAGACTCTTTCAGTTCTTTCTCATACTCAGTATGCCATTTCAGCAGGATTTGAcCCCTTTCCACCCGACGATTCTGGGCCTCATGATATTCAAGATGAGGACATTTATTCAAACCTCGAAGATCTTGCTTTGAACCGTGATATAATTGATGAAGAAAACCCCTATGATGCAGTGACCATTGAGGAAAGTACGAAAATTTACGAAGACCTTGTTGCTTATCAGAAAGTTCCGAAACCTGAGCGTCAGAGCTCGGTAGAAGAGAAGAGGAAGTATGTTGTAGCAGAGATACTCGAGACAGAGAAGAGTTACGTTGAAgcccttaaaatgattcaagaGtattttataaaaaaattacaaatatcACCTGATGACAAGGCTAAGATCTTCATCAACATAGAGGAGTTGTGGAGGACCCACACCAAGTTTGTGAAGAAACTGGAGAAAGCTTGTACTACTGATGGAGGAAAGGAAATCAGTCCTGTTTTTGTAGAATTTAGAGATGACTTACTAAAGTATGGAAAATATTGCACGAAAATGCCAGAGGCGCAAACATATATTGATTATCTTTCAAGAACTGATACCAAGTTCAGAGAAGCATTAGAGGATTGCCAGAGAAGAGCAAATAGCAAGTTTGCATTGAGATCTTTGTTAGTAGTTCCTTTTCAACGGGTCTTGAAGTACCCTCTTCTAATACAGGAGCTTAACAAGCAGACGAAATCAAACCATCCGGACAAGAAAGGTCTTGAAAAGGCCCTGGCAGCTGTTCAGGATGTGGCAAGATTTATCAATCAATTGAAACGTGATGATGAAAACTTGAGATCTGTTCAAGATGTCCAAGAAAGCTTGAGCAGTGAATTGGATATTCAGTTAGTTAACTTTGGTCATCTTCTTAAAGATGGTGAACTTCTTATTAAAGTTAGTGATCAGCCACCAAAGAAAAGGCATGCATTTCTTTTTGATACAGCCTTGATTATCTGCAAAACAAAGGGCGATACTTACCACCACAAGCAGTCCCTGCATCTGCAATATTTTGAAATTCAAGATGTACCTTCAAATACAGTAAAGAATAATAAATTTTCTCACAGTTGGCATATGAAAGAACAAGGTGACCGTAACTCATGCGATATGTCAACGAAAACACTGGACATGAAAAGCAAATGGATCAGTGACATTACAATAGCTATGGAAAATCTTACATTAAGGAATATTGAACAagGCAAGCACGAATTCCGGCTTCACACGTTTGCTGCTCCGACGTATTGCGGAGTTTGTGAAAATCTTTTGTGGGGTTTAATAAACCAAGGTTACAAGTgtgcaaTTTGCGATGCCAGCGCCCATAAAGACTGCATACCCAAGAGCAGCGCGTGTCGAGCGAGTCCTGGACTCCACAATCAGTTCCCCGGTACGTCACCGTTTCGCCCCCATCTCGCCCACAGAAATCCCTTTGCAAAGCAATCTTCATCGCCCGTTGCACCCACCCTCAGTCCTGACTTGTCCAAAGAGAGGAAAATTTCGGCGCCAGCAAGAATGCGATCAGGAACTCTTCCCCTTTACGCAGCGAGTTCAAATTTTGCTGGCTTGGCTCCTGGTGGTCGCCCAAATTTAACTTTTGTTGTTGGAGATGAAATTGAAGTGATCAACAGAACCGACCCTGAGTGGTGGGAGGGACGGTCAAAAAAGACTGGAGCGGTTGGTTATTTTCCTCAAAGCCACGTGACTTTGAAACCATCGTCATCCCGCTATGAAGAAACGACTATTAGGGAAGAAGTTAATTCGACTCCTGCGCCATCAAATTTGAATGCATCATTAAAGACTTTTAACTGGTTCGCAGGAAGGAAGGACAGACCGGAGGCAGAAAATGACTTGAATAACAAAAGCGACGGCACTTTCCTTATAAGGGAGAGTGTTAACAGAACCGGAGAATACGCCTTATCTGTCAAaTTTCGAAATAACGTTAAACATATAAAAATTCCATACGAAGATGGGGCTTTCTACTTAACAAAAGCAATATACTTTGGATCAGTCCAGgaACTAGTTGAATACTACAAACAGAACACGTTGGGTGTGAGTTTTCCAGGCCTGGACACAAAGCTACGGCATGGAGTGAACGAAGATCAGAAAGGAAAAGGCGTTGGTTGGGCCAAAGCCATGTATCCCTACAGCGCAAGGAACGCAAAAGAAATATCAATTCAGAGAAATTCCAGAATTCTTATACTCAACAAAGAAGGTGATTGGTGGAAAGGAGAATGTGACGGCCAGGTTGGTTACTTTCCTTCGAACTACGTAGAGGTTCTCAAAGAGAACATGGAAACAAAGAATTAAAATAGTCACCTGCAGAACTAATCCACGTTCATTCAACTGATACAAGTAAATAGAACCGGTTTTATGTCCCGGTGGTCGAAGGAGAAATATCAAGATGAATTTTCGTGGATGAAAGCTGCCCTTGATTAGCGGGAAATAACTGCCAGCAACCAGCGGATCAATCAATTGGTGATCGGAAATCAATTCTGTCGTACGTGCTGGAAACAAGTGTCGTTTCTGTTCAGCCGAAAGACCAAAGCTCCGTCCCAAGTCGAGGTCAAGGCAGCGATTTTATAATGAACAAGGACAAAG

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45818 all species →	PROTEIN VAV	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05730	VAV; guanine nucleotide exchange factor VAV	-	Lipid and atherosclerosis	ko05417	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.