Gene detail

Detailed information of FUN_034034-T2 in Siderastrea siderea

Genomic Location: contig_37:953948...1041339
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_034034-T2

ATGTCATCCTTAGAGAAGATGAGGATTCAAGGGATCCGTAGCTACTCACACAGTGAGCCCAGTGTTATTGAGTTCCAGAAGCCATTAACATTGATTGTGGGACCAAATGGAGCTGGAAAGACGACAGTCATAGAATGTCTTAACTACATGGCGACTGGGGACATGCCTCCAGGCAGCAAAGGAAATCTGTTTGTGCATGATCCAAAGGTTGCTGGTGAGACAGAAGTAAAAGGTCAAATTAAGTTGAAATTCAGAGATGTCACAGGAAATCCTATTGTTGTAACACGGACACTGGTGTCTGAGCAGAAGAATAAGAAGGTACAAACAAGGACTATGGAGGGTAACATCATGCGAGAGGTTCATGGGGAGAGGCGAAGTTTGAGCTCAAAGTGTGCAGATATTAACAGAGAGatgatTTCATTTCTTGGGGTATCCAAAGCAGTGTTGGATAATGTAATTTTCTGCCATCAAGAGGAGTCCAACTGGCCACTCAGTGAGGGGAAAGTGCTAAAGCAAAAATTTGACGATATCTTTGCTGCGACAAGGTACATCAAAGCACTGGAAGCCATTCGCAAATTTAGACAGGAGCAGGTCCAAACGGTGAAAGAGTATACTATTGACTTAAATCATCTTAAGGCAAACAAGGAGAAAGCTGAACAAATAGCAGATGAACTCACTCAAACCCAGGGAAAGGTTGAAGCAACAAAGGATACAGTTAAGGAACTGAACAAGAAGCTTGAACCAGTTGAGTTGAGGCTAGCTGAGCTTGCAAGCATTGCAGATGACGTATTTCAGCTAGAGAAAAAAGTTGAATCCTTGTCGACAGAAAAGAGACAGCTACTAAAAGTGGAGGCTGATCTTAAAGACAAGATCACCAATCTCTTTAATGGATCCGTGGAAGAGCTGCACCAGattttttcagattttcaaACAAAGGTCATGCAAAAGGAAAACACACTGAGAGATAATGAAGGAAAACTGCAGAAGTTGAGCAAAGACCAGCAAAGATTGACTGCTGAGCAAAATCAGCTTCTCACAGAGGGAGGGAAACTTGAACAACAGGCTCAGAGACACCAACAGAACCTAAGTGACAGAGACAAAGCGATTGTAGATCTTGCTAAGGAGTTTGACTTCAGAGGTTACGAGAAAGGCCCCTTTACCGAGGACAGAGTGGATCGTTTCATggaagaaatgaagaaaaaatatcaaaacgtTATTGATGACACAAAACGCAAAAGGCAAGTATTTGATGAGAACTTGAACAAAGTGCAGAAGAAAATTGATGACATGAAGAAGAATCAAGCTCAGTGCGAGGAAACAATTCGGCTCAAGAACAAACTAATGAGGGAAAATCAACAGAAGCTTAGGCAGATTGGTCAGGAGTTGAGCAATGTTGATGCCTCAGCCAACAGACTAAAAACACTGGAGGAAGAGCTACAGAGAGCGGAAAGAGATCTTGAAGTTGCTCAAGAAAGTGGCAATGTCAATGAATTAGGAAAAGAGATCGATAGACTGCAGTCTGAGAAGCGTAATGTTGATAATGAACTGCGTCAGCTGAGAGAAGAACAACAAGCGATGCACATGCAGTCAACAACACAAGCTAAACTGGACATGTTAGCCAAAGACAAAAGCAACAAAGAAGACGCTATCCAGAAAATCATGGACCGTCACGAGGAGGATCTTAAAACTACTCTGGGCACACGTGGTACGTCAGAGAGCCTCCATCCAAGATTACAGGAGCACATACGCACAAAGGAGAGGGAGCTGAGGGAAACCAGGAATAATTTGCAGAGGCTGAAACAACAGCTGTCTTCCAAACAGACACGGAAACGGATGATCACAGAGAACTTGACAGACAAAGAAAGTCGCGCCCAGCAGCACAGAAGACAAATATCTGAAGCATGTGGGGATAATGATTACAACACCACAAGAGAAAACATCCGGGAAAACATTACCACTCTGCAAGATGAACGAGGAATTATTGGCTCACTGGAGAAAATCTACTCCAAGTATGTCTCTAAACTGGAGAGTGAAGATGTGCACACAAGCGGGTGTCCTCTGTGTCACCGAACATTTGGCACCAACAGAGAGATTGCTGCTCTTGTCACAGAGCTGAGGACTAAAATTCGAACTCTTCCAGAGAGACGAGTagcaaatgaaagaaatcttGTTGAGGAACAAAGACGCTATGATTACATTCTTCAGCTGGCCCCAGCTAAAGAGACTCTGGAATCTctggagaaaactgaaattccTGACGCCAAATCGAAATTGGAAGAGATGAAAGCTGAAGTTCAAAAGATCGAAGATGAGATCACAGAGCTTGAAGACCTTCAGAGTATTTCTGAAAGCGAGGAACAAAGCGCCAGACAGATGGAACCTGACATCCGTATGCTGGACAAATACAAATCAGAGCTGAAGGAAATGGATAGGAACATATCTCTACTGCAGTCCAAACTTCATGGCGTTGCTCCTGGACGTACCATGCAGTCCGTTTCCAACGAAATCTCTGACAGACAAGATCGATCTGACACTCTTAATAACCACATCGATCGCAAACGAACTCAGTTAAACCAGCTCCAGCGGCAGCTCAGTGAGCTGGAGACAAACGTGCATGAACTAAAGTCACAGAAGCTCCGTCTGAAAGCCCAGTTACAGACGAGAACACATTTGGAACAACAGAAAGCTGAACTCACCGCAAACAACAGTGCCTTTACAAGAGAGATTAAGGAGGCAGAAACAGAGCTAAATCCTATTGCGGTTAGTAtcaatttcttttgtaatttccaTTGCGTTCCTTTTAACCAATCTGCAAATCTAAATCCAGGTTTTTGGATCGGAAATCCAATATTCCATTCCGTTAAGGAGAAAACTAACGTGCAGGTTTTCAATGTTTCAAAATCAGTTTCGGAGAGAAACATTCTTATCGATCCTGAAGACTGTAAATTACATATGTTAAGAGAGGGGGCCTGTCAGTGA

Transcript

FUN_034034-T2

GCGGGCCATGCCAGTCAAAATGGCGGGAGAATTTCGCATTTAGGGACGAATACGAATACAAAGAGAgattcatttgttttgtttgagaGACAGATCAACCATCAATATTACAAGGAAGGTGTTGTCAACACGCAGAGCACAGGTGTAAAAGATGTCATCCTTAGAGAAGATGAGGATTCAAGGGATCCGTAGCTACTCACACAGTGAGCCCAGTGTTATTGAGTTCCAGAAGCCATTAACATTGATTGTGGGACCAAATGGAGCTGGAAAGACGACAGTCATAGAATGTCTTAACTACATGGCGACTGGGGACATGCCTCCAGGCAGCAAAGGAAATCTGTTTGTGCATGATCCAAAGGTTGCTGGTGAGACAGAAGTAAAAGGTCAAATTAAGTTGAAATTCAGAGATGTCACAGGAAATCCTATTGTTGTAACACGGACACTGGTGTCTGAGCAGAAGAATAAGAAGGTACAAACAAGGACTATGGAGGGTAACATCATGCGAGAGGTTCATGGGGAGAGGCGAAGTTTGAGCTCAAAGTGTGCAGATATTAACAGAGAGatgatTTCATTTCTTGGGGTATCCAAAGCAGTGTTGGATAATGTAATTTTCTGCCATCAAGAGGAGTCCAACTGGCCACTCAGTGAGGGGAAAGTGCTAAAGCAAAAATTTGACGATATCTTTGCTGCGACAAGGTACATCAAAGCACTGGAAGCCATTCGCAAATTTAGACAGGAGCAGGTCCAAACGGTGAAAGAGTATACTATTGACTTAAATCATCTTAAGGCAAACAAGGAGAAAGCTGAACAAATAGCAGATGAACTCACTCAAACCCAGGGAAAGGTTGAAGCAACAAAGGATACAGTTAAGGAACTGAACAAGAAGCTTGAACCAGTTGAGTTGAGGCTAGCTGAGCTTGCAAGCATTGCAGATGACGTATTTCAGCTAGAGAAAAAAGTTGAATCCTTGTCGACAGAAAAGAGACAGCTACTAAAAGTGGAGGCTGATCTTAAAGACAAGATCACCAATCTCTTTAATGGATCCGTGGAAGAGCTGCACCAGattttttcagattttcaaACAAAGGTCATGCAAAAGGAAAACACACTGAGAGATAATGAAGGAAAACTGCAGAAGTTGAGCAAAGACCAGCAAAGATTGACTGCTGAGCAAAATCAGCTTCTCACAGAGGGAGGGAAACTTGAACAACAGGCTCAGAGACACCAACAGAACCTAAGTGACAGAGACAAAGCGATTGTAGATCTTGCTAAGGAGTTTGACTTCAGAGGTTACGAGAAAGGCCCCTTTACCGAGGACAGAGTGGATCGTTTCATggaagaaatgaagaaaaaatatcaaaacgtTATTGATGACACAAAACGCAAAAGGCAAGTATTTGATGAGAACTTGAACAAAGTGCAGAAGAAAATTGATGACATGAAGAAGAATCAAGCTCAGTGCGAGGAAACAATTCGGCTCAAGAACAAACTAATGAGGGAAAATCAACAGAAGCTTAGGCAGATTGGTCAGGAGTTGAGCAATGTTGATGCCTCAGCCAACAGACTAAAAACACTGGAGGAAGAGCTACAGAGAGCGGAAAGAGATCTTGAAGTTGCTCAAGAAAGTGGCAATGTCAATGAATTAGGAAAAGAGATCGATAGACTGCAGTCTGAGAAGCGTAATGTTGATAATGAACTGCGTCAGCTGAGAGAAGAACAACAAGCGATGCACATGCAGTCAACAACACAAGCTAAACTGGACATGTTAGCCAAAGACAAAAGCAACAAAGAAGACGCTATCCAGAAAATCATGGACCGTCACGAGGAGGATCTTAAAACTACTCTGGGCACACGTGGTACGTCAGAGAGCCTCCATCCAAGATTACAGGAGCACATACGCACAAAGGAGAGGGAGCTGAGGGAAACCAGGAATAATTTGCAGAGGCTGAAACAACAGCTGTCTTCCAAACAGACACGGAAACGGATGATCACAGAGAACTTGACAGACAAAGAAAGTCGCGCCCAGCAGCACAGAAGACAAATATCTGAAGCATGTGGGGATAATGATTACAACACCACAAGAGAAAACATCCGGGAAAACATTACCACTCTGCAAGATGAACGAGGAATTATTGGCTCACTGGAGAAAATCTACTCCAAGTATGTCTCTAAACTGGAGAGTGAAGATGTGCACACAAGCGGGTGTCCTCTGTGTCACCGAACATTTGGCACCAACAGAGAGATTGCTGCTCTTGTCACAGAGCTGAGGACTAAAATTCGAACTCTTCCAGAGAGACGAGTagcaaatgaaagaaatcttGTTGAGGAACAAAGACGCTATGATTACATTCTTCAGCTGGCCCCAGCTAAAGAGACTCTGGAATCTctggagaaaactgaaattccTGACGCCAAATCGAAATTGGAAGAGATGAAAGCTGAAGTTCAAAAGATCGAAGATGAGATCACAGAGCTTGAAGACCTTCAGAGTATTTCTGAAAGCGAGGAACAAAGCGCCAGACAGATGGAACCTGACATCCGTATGCTGGACAAATACAAATCAGAGCTGAAGGAAATGGATAGGAACATATCTCTACTGCAGTCCAAACTTCATGGCGTTGCTCCTGGACGTACCATGCAGTCCGTTTCCAACGAAATCTCTGACAGACAAGATCGATCTGACACTCTTAATAACCACATCGATCGCAAACGAACTCAGTTAAACCAGCTCCAGCGGCAGCTCAGTGAGCTGGAGACAAACGTGCATGAACTAAAGTCACAGAAGCTCCGTCTGAAAGCCCAGTTACAGACGAGAACACATTTGGAACAACAGAAAGCTGAACTCACCGCAAACAACAGTGCCTTTACAAGAGAGATTAAGGAGGCAGAAACAGAGCTAAATCCTATTGCGGTTAGTAtcaatttcttttgtaatttccaTTGCGTTCCTTTTAACCAATCTGCAAATCTAAATCCAGGTTTTTGGATCGGAAATCCAATATTCCATTCCGTTAAGGAGAAAACTAACGTGCAGGTTTTCAATGTTTCAAAATCAGTTTCGGAGAGAAACATTCTTATCGATCCTGAAGACTGTAAATTACATATGTTAAGAGAGGGGGCCTGTCAGTGAATTTCAATAGCCTTCGTTATTTTGCTCCTCTGGAATTAGTCTTCAAAGACCAAGATCTTAACTGAAAAGGCTTGAAAGTTTATGTTTTCTTCTAATGGAAACTAATATTATTTTccatttaattttattattatttttctatttataACAAGATTAGGTatcaacatttttctttgtcagATTAAGTTCACAATAACTCAGTGGGGCCATTCTTGACTATCTGCGAAACAACCAAATTTTTGGCGGTTCGCAATAGAACTTAGAAATGTCCACGGACTGTCAAACAattcgctctgacaaagggctaacgctcgaaacgttagctttcaacctctttacggtggccaatttaccgtatcaactcagctgataaatccaaaattttgggGCTCAAATATGGTCGAATAGCAGGAAAAGGTAGATCAGTGATATTTAAACTTGCGCGGTAAATTGGATATTTCAGGCCAGACTTGAAGAGCTACTGGATCAGAAACAAGACGTGGTTGGTCAGAAGGAGGCGGCGGATGATGAGAACCGCAAGTTGGTAGGTGCAGAGTCCCTTATTCACATAGCAGTGTTTATTAAATCTGACATTTTTGTGCCAAGGGTTCCTACATACTGGAGAAAACTTTCTATTTTAGAGAACCATTTCAATTGCATGgatattttcttttctattttacatCACTGATGTTTGATGAAAGATTTCTGGTGTATCGTGAACGAAAATGTTCACTTCTTTCGGCCAATATCGGTTTGTACAGTCGGAGCTTCACCTAATAACTTTTTTGTGTTctcaaaaaataatttatttatttgttcatttTCAGCTAAACGAAATCAGAACAAGTGGCGACAAAGTGCGCGAAAAAACAGCAGAAATAAAAAGGTACGTGAATCAGGGAGGTGATACAGCTTTACAAGAGAACGAATCTCGTTTAAAGGAACTTGAAGGACGAGCAGACAGACTGAAGAGGGAGAAAGAAGCTGTTTCAAATGAAATTGATAAACTGAAGGATGACATAGCTAAACAGCAGATTCGGGCGCGTGAACTTGAAGACAATATTCAGCTGAAGAGCACTGAAGAGGAAATCCAAAACATTGAGAGGAAGATAGCGGATGTGAAGAAGGAATTGAGAAAGTTTGGCGAGCACCAGGAACTCATAAGGTAAGAATTGCTTCCTCCTTTCGAATGCAGTGTTACAGTAAAGTGGAAAATTTGCCATGCGTACACCCCAGGTTTACAGTAACATTCTAAAAAATATTCAATGGGCCGTCTGCCGAGAGTGCATGCGATTTTCAGGTCAAACGAGCACAGGGATTTGAACTCTCGTCAACTGTCATTTTCGTCTGGTCCTGGTATTAGACATCAAAACGTCAAACtttgaaataagaaaaataaaattcttctttgTATAAAGTAAAGTTACAAATGCAATAGACGGAAGAATTCCCCAATCCCTTTGTATTCACTAAAGGTAGGAGGAAAAGTAGACTTTGCCCTGTGTCCTCTGAACttcgagcagtctctctttccgctgaGGGATAGtcaagggaaacgaacaagcgcgCGAGCGCGAATCGTCTGCCGCGTTGACACATGACGAGCGTGTCGAGCCGCTCACtttccggctcactacactagcggctcgacacgcgtgTCACGTGTCaacgcttgttcgttttcctccactatccctgagcggaaagaagGGCTGCTCGTAGTTTTTGTGTCGTAACATTATTTTGTCTAACCACCATACATTCTTTCGTGCTAAATAGCGATCTTATGCACACAGCATGAAATCATGGATTTACGAATGTTTAGTTCATGCATAAAGATACGTAATTATAAGGCCTCTCTCTAAGACGTAATTACGCACTATCGTAAAGATGCGTTTATGCAAATTTATTATCCGTAAAGATGCGTTAACAGGGTCAATACGCTTTCTTTACGTAGTCATTACAGATGCGTAAATTTTAGATTTGGAGAGTCCATAGTTATGACGTGCTTGTTGTGTATTTTGGCCGCTGATGAATATAAAGGTCACATACACCCCCATGTGCAGATTTCGTCACTGAGTTACAGTAACGCATGCTTAAAAGGCGTCGCTAGCAAGCAGGGCAGAGTCATTTTCCCTACGTTTCAGTCTAGCAAATTGTAAGGAAAAGGGTATTCTGCATCTGTCAAATCATAGAATTTATATTATTGAAATTTCCAGTCCGTTTAGTAAATGATATGAGTAGCCAGGTCTAAGGGTAACAATTATTAAACTGGTGATAGTTAccttttttgacttttgttttaGTGAGAGGCAGGAATTGCAACAGCAGTCTGATGAATTGAGAAAAGATGTAAGTTTTAAGCATCAGTCATTTTCTCGTTTGTATTATCTCCTTGCCCCAGTCATGTCTCGTGCACGGCTTTTGATCGCCTGATTTCTCATCTGTGTTTTTTAGAAAGCCCATTACGAGGGGCGACT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04423 all species →	Rad50_zn_hook	Rad50 zinc hook motif	Motif	Interproscan
PF13476 all species →	AAA_23	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013134 all species →	Domain	RAD50, zinc hook	Interproscan
IPR038729 all species →	Domain	Rad50/SbcC-type AAA domain	Interproscan
IPR004584 all species →	Family	DNA repair protein Rad50, eukaryotes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18867 all species →	RAD50	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000722 all species →	Biological Process	telomere maintenance via recombination	Interproscan
GO:0000794 all species →	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0003691 all species →	Molecular Function	double-stranded telomeric DNA binding	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0007004 all species →	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0030870 all species →	Cellular Component	Mre11 complex	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0043047 all species →	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051880 all species →	Molecular Function	G-quadruplex DNA binding	Interproscan
GO:0070192 all species →	Biological Process	chromosome organization involved in meiotic cell cycle	Interproscan
GO:0090305 all species →	Biological Process	obsolete nucleic acid phosphodiester bond hydrolysis	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10866	RAD50; DNA repair protein RAD50	EC:3.6.-.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.