Gene detail

Detailed information of FUN_034049-T1 in Acropora pulchra

Genomic Location: ptg000024l:4156466...4161177
NR annotation: XP_015752517.1, PREDICTED: nuclear pore complex protein Nup50-like [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_034049-T1

TTGAATACCCGTCGGATTTCCTATTGCGTCACCGACGAACCGGCGGCTCGCAAATATGCTCTTGGTTGAAAAATTCGTTAATTGTTTCTATGGCCTTTCTTAATTGAGGATCAAGGCCCAGTGGATGCCTAGTAAAAATTATCTTTTCAACTTGCTTTGTCAACAGTTCTCTTATTTGGCAAATTTTTGATCGAGGAAGTTTAGGGAGGGTAGGGAGAAGTGGATCTCCCATGGAACATAAATAACACTGCTACGCATGCGATCTGACAGAGTTGAACACCAAAATGGCGAAGAGGGTTGCAGATAAAGAATTGACACACGATAATTGGGACCAGGAAGACGACGAAGAAGAAGCTGGTCATTTCAAGATTGCCTCAGATGAAGATTTAAGCAAACGAAAGATCATCAAGGCCAAACGACGGGTGAATACAGCAGACAAACAGGATGGAGGCATCTTTCAAGGATTCTCTGGATTTTCTGGTTTAAATAACAACTCTAAAGGTTTTGGTGCTAGTTCAATTGGAATGAAACCTTTGGCTTCCAGTTCTTCAAATACATTCAGTAATGTAAAACCTGTGCTGGCAGATACTTGTGCCACAGTGCCTTCAAGCAGTAATGCTGGTCAAAATGGTGTGAAAAATAGCTTTTCAGGAAAAGCATCAGATCATCAACCATCAAGTGTTTCTTATCAAGACAATATCAAGGCTCTGAATGAAAGTGTCCTTGCATGGATACAAAAGCACATAAACTTGAATCCATATGTTGATCTGTCACCTATTTTTAATGACTACAAGGAACATATGAAGGAGATTGATTTAAAATTTTCTGCCTCAACAAGTGTAACAGAAGCAACGTTAAATGACACACCAACAACAGTTTCAACATCACAACCTACTGCAAAGGACACTTCAACTTTTGGTGCATCTCAAACAGTGCAACTGAAAGAAAGTTCAGAAAACATCAACAAAGGTGAATGTTCTGAAAAAGAAGCCACATTATGTGAACCAGGAACATCTACTGAAGAAACTGCAGAAGATGAAGTCCCAAAACCAAAAAGTGTTGTGGTCGCTGAAGAGGGGGCCTTTCACTCCATTAGATGTAAACTTTTTTACAAGCGAGAGTCTGATTGGGTCGAGTTAGGTCTTGGAATGATGAACCTCAAAAAGCTTGAAGAAAAGACACAAGTGCTTGTGCGAAATGATACAGCTCTGGGCAAAATTCTTTTGAACATCTACCTGGCAGAAAACACACCCATCAGCCGATCTGGAAAGAATAATGTCATTTTAATGTCCATACCAAACCCTCCTCTTTTCTCCAAAGACTCGGAAGGAGATAACAGCAAACCAGCAACCTATCTAATTAGAGTTAAAACAGCTCAAGATGCAGATGAACTCCACACCCAACTTAATGCAAATAAACCTTCTAGTTAGTGGGGACATTTTTGAGAACCTAAATGAAAAAATCATTGCTAGTTAAAAGCTTGAAGTCCGAGTTTCCTGGCAAATGGATGAAGGAGAGACGATTTTGGAGTTTCAGAAGTGAAGTGCCAGAGACAGACAGCCCCAAGACCCTGAAGAGACATTGCTGCTGAAAAAGGGCAAATTTTTGCAGTTAATAGTTTAAGGGCAAACAATGACTGGATTTTTACCCAATATGGGAGAATCTCAGTACTTGCAGATTTGTTTTAAATAATAATAATTATTTTGTAGCCAGTGAAACCTTTCTTGCACCTGAAACTGTTGTTTTACAGATTTGGCCAACTTGACAAATTTCCATTTCATTTTGCAATAATTATTGAAGTTCATGTAACTTCCCTTAAGTTATAACACAGTTACATTTGAATGGTTTTGTGAAGCCTTAAAAGTCACCTAAGTAACTGTAACAATTTTTCAGTTGCCAGGTTAACCTTTTCAAATAAAATTAATGGCATCAAAACAATGAAAACGAATCTTGGACATCTGAATAACAGAGAATGGTGGGCTGTTAATATTTGCAGTATGGACCAGAGACATTGTATTAAATTAATACTTACCAGAAAGTGAATAATGCTTTTTATGAGCTGAAAAGGACATGGCAAAATCACATTTTTATCTTGGTTTTTTTAAATGAGGGAATAAAACAGAATTCCTTATGTGTTTGTGAATTATTTTTGTGAGCATGTCTGTTTTGCATTAGCAATAAATAAAGTCACAAAATTTTATTGAGTCATGAACATGGATATGCAAACAACATGATGGAACCAATAACATTTTTTAATATTGCCATAAAGTTATTGGAGGGCCTTATGCATTATTTTGTATTTTGGTGATTTCAATTAACTGTGCCAAACATTCAAGCAAATCATGTTTGTAGAATCCTGGCCTCAGAGAACCCTGTGAGAGTGTTAAAAATGCCCCGTGTAGCATTGGAATTATTGCCAAGAATCTGATGAGTTGGGGAAGAAAATAATGATTAAGAGTGGCAGCTAGAGTAAGGGGTAACAGTGTAGAAGGTGAGAAGTTAGAGTTCTGCTGAGTGATACATATGAAGGAATTTAGTGGGAGGTGGGTAGACCCAGGAAAATTTGACATTATTACCAGAGCCAGAATCAAATTCCCCACCCCTGGGCACCCAGAAAATGTCAAATTCCCACCCCTATGTGTCGCTTTTTGCCCAAAACAAGTCGTAGCTATGTCAAATTCTCGAACCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08587	Nuclear pore complex protein Nup50 OS=Rattus norvegicus OX=10116 GN=Nup50 PE=2 SV=2
Q9JIH2	Nuclear pore complex protein Nup50 OS=Mus musculus OX=10090 GN=Nup50 PE=1 SV=3
Q9UKX7	Nuclear pore complex protein Nup50 OS=Homo sapiens OX=9606 GN=NUP50 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006882 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00638 all species →	Ran_BP1	RanBP1 domain	Domain	Interproscan
PF08911 all species →	NUP50	NUP50 (Nucleoporin 50 kDa)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000156 all species →	Domain	Ran binding domain	Interproscan
IPR045255 all species →	Family	Ran binding protein RanBP1-like	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR015007 all species →	Domain	Nuclear pore complex, NUP2/50/61	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23138 all species →	RAN BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14295	NUP50, NPAP60; nuclear pore complex protein Nup50	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.