Gene detail

Detailed information of FUN_034151-T4 in Dendrogyra cylindrus

Genomic Location: contig_111:1060450...1076286
NR annotation: KAJ7386916.1, hypothetical protein OS493_006951 [Desmophyllum pertusum]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_034151-T4

ATGCCACTCCTAAAGAGTGATCTCTATGCAACCCTAATGGAGTGTGTCAATGGTGATCTCAGCCTGTCTCTACCCTTGTGGCATACAGATAGATTTGCTGTGGGTGTGGTTGCGGCAAGTGGTGGGTACCCTGGTTCTGTGAAGAAAGGGTGTGCTATTCAAGGATTAAAAGATTTAGAGGATGTAGATAATGTTGTGGTGTTTCATGCTGGCACAGCCATACTGAAGAATGACAAAGAAACAGTGGTAACATCAGGTGGTAGAGTGATGGCAATTGTTGGGCTGGCACAAGGAATTAATGATGCTCAGAAAACAGCTTATGAAAGTATCCAGAGGATTTTCTTTGATGGAATTCAGTACAGAAATGACATTGCATCCAGAGCTTGCAGACCTAAAAGTTTGACGTATTCTGATGCTGGGGTAGATATAGATGCTGGTAACTTGTTGGTAAATGCTATTAAGCCATTGGCTGCGTCCACTACTCACAAGGGCTGTACAGCAGACCTTGGTGGCTTTGGAGGCTTCTTTGATCTCAAGGCTGCTGGATTCAAAGATCCTTTGCTTATCAGTGGTACAGATGGAGTGGGAACAAAACTCAAGATTGCACAGGCTGTTGGACTTCATAGTTCAGTGGGTATTGATCTGGTTGCAATGTGTGTGAATGACATTCTTGCTCATGGTGCCGAGCCATTGTTCTTCCTGGACTACTTTGCTACTGGCAGGCTGGATGTGGGTGTAGCCAAGGAGGTGATTCGTGGTATAGCACAAGGCTGTTCACAAGCTGGATGTGCTCTTTTAGGAGGTGAGACAGCGGAAATGCCAGGCATGTACTCATCTGGTGAATATGACATCGCTGGATTTGCTGTAGGTGCTGTTGAGCGAGACAAAGTTCTTCCTCGATCACAGAGTATCACTGCAGATGATGTTTTAATTGGTTTAGCTTCTTCTGGCATTCACAGTAACGGCTTTAGTTTAGTGAGGAAAATCATGGACAATGCTGGATTAAGTTACAATTCACCCAGTCCATTTAGCACAACTGAAGGGTTACAGTCCGTTACTAAACTCGGTGAAACTCTTCTTACGCCAACCAGGATTTACTGCAGTGCTGTTCTACCTCTAATGAACAATGGAAAGGTTAAGGCCTTTGCACATATAACAGGGGGAGGTCTGACTGAGAACATTCCACGTGTCCTACCTTCTGGTTTGGGCGTATCTCTAGATGCTAGTTTGTGGACTATGCCTCCAGTGTTTGGTTGGATATTTGGCCAGGGAAATGTTCCAACACAAGAGATGGCTAGGACATTCAATTGTGGCATTGGAGCAGTCCTTATTGTAGCAAAAGATACTGCTTCATCAGTAATGGAGCATTTCAAAGTGACTGAAGAACAGGCTTGGGTTATAGGAAAAGTTACTGAATGCACGGAAGAGAGCAATAGAGTGATTGTTAGAAATCTTGAAGATGTGCTTTGTAAATCTGCAGCAAAAGCAGACATCAAACAACAGGATAGTGCAAAAAGAGCAGTCAATGGACCTGTCaaaaggccaaaactaagcagtGGACAAACAGAACAACACATAGGTCAAGAAATGAAAGTGGGTGTTCTTATATCGGGATCAGGAACAAACTTACAAGCACTGATTGACCATAGCTTAAGGCAGGACAGCAGTGCTAACATTGTATTGGTCATTTCTAATGTACCTGGAGTCCAAGGATTGAAAAGGGCTGAGGCAGCTGGTATACCAACAAAAGTTATAAAGCACAAGGAGTTCAAAAGCCGTTTAGATTTTGACATGGCTGTGCATTCAGCATTGGAGGAGGCAGGAGTGGAATTGGTGTGTTTGGCAGGGTTTATGAGAATTGTTACAGCAGAGTTTGTTCGCAAGTGGCATGGCCGACTGCTGAATATCCATCCTTCATTGCTGCCTTCCTTTAAAGGCATGCATGCACACAAACTTGTGCTAGAGGCTGGTGTTTGTATATCAGGCTGCACTGTGCATTTTGTTGAGGAAGAGGTTGATGCCGGAGCAATAGTGACCCAGGAAGCAGTTCCTGTGTTGAACGGAGACACCATTGAAACACTTCAAGAACGAGTGAAATGCGCTGAACACAGAGCTTACCCACGAGCCATGGAACTACTAGCTAGTGGCAGAATGAAGCTAAATGATAACAACAAAGTACAGTGGATGTGGTAG

Transcript

FUN_034151-T4

CTACAAGGATGCTGCTTTACTGATCAGAGTAAACTATGTttaatggataataataattattggtcTCATAAAGGTTATCTGAGGGAGGCATCATGTCTCACAATACTATAAGTTGCTTCATGTTGCAAAAATCAGGATAAGTTTAGGTGAAGTGGGCCACTGTGGGTAGAGTTCAGACTTACCTAGCTACTCTTTTACATGTTGTTCAGTTACTATAAGATGGTATCTGAATTTTATTGATAGCCTTGTTTTCTCAGTCATTCAAAGTTTAAAACAGAAatatgtgtggttccagaaaatatccatacccccaccacaaCAGGAATTTCACATAAGACCCCCCCCTCCACGTCTCCAGAATTTCCATATTTGTAAAGAGAAATAAACCCCCCTcacctctggaatttccaaacatatttttcataccccatTCCCTCCCAGCCTCTCTgggaaaaaacattttaaaaagaaattgtgcaaatgttctaaacattattTTAAGGCTGCTTTCTCTTGTAAACATGACTATAATGTATATCTGATTGATTGGAACATGTCTTTACAGTGCTTTTCACAAAACTTTTGACAAACAGATTCAGAAGTTGGTTTGAAATTCCCGAAGTTCACTACGAACTTGGGAACTTCGTTACGTAGTTTCAAATTTCGAACTTTGAAGCGAAGTTGTGAATTTCACAGGCAGTGAAGTTGGCAGGTTGCGATGTTTGTAAGTTGAGAAGTTTGTGTTGCTTTTGGCTGCTTTCGAGTTTCTTGGGTGCCGTTCAACCAGATATGAAGCAACTCGAACTtctcaacttgcaaacttttcTGCATGTGAAATTCACAACTTTGTTTCGAAGTTCGCAATTTGATTGACGACAACGTAATGAAATTCTCAAGTTCAAGGGAACTTCAGCAATTTCAAACGAACTTCGGAAACCCTTTGCCAAAAGATTTGCGAATCATCACACAATTGTCATCACTAATAAACATGAACTTTTCACAAACAAGGATGACTTTTTTCGATCAAGAAACAAACAACACTAGTCACCAAATGCAATACATTTCGGTCAAACCACATGACTGgactggaatttccaattccctctGTGGTGTGGTGTGGATATTTTAGCTCTAAAAATGTTATCGTCTGTTCAAACTAGTCAGTTTTGACTAGCTGTCATAATtgttatttaattaacattacAATCATTGCTTCTTGTTTAGAGACACAAGTAATCATGCCACTCCTAAAGAGTGATCTCTATGCAACCCTAATGGAGTGTGTCAATGGTGATCTCAGCCTGTCTCTACCCTTGTGGCATACAGATAGATTTGCTGTGGGTGTGGTTGCGGCAAGTGGTGGGTACCCTGGTTCTGTGAAGAAAGGGTGTGCTATTCAAGGATTAAAAGATTTAGAGGATGTAGATAATGTTGTGGTGTTTCATGCTGGCACAGCCATACTGAAGAATGACAAAGAAACAGTGGTAACATCAGGTGGTAGAGTGATGGCAATTGTTGGGCTGGCACAAGGAATTAATGATGCTCAGAAAACAGCTTATGAAAGTATCCAGAGGATTTTCTTTGATGGAATTCAGTACAGAAATGACATTGCATCCAGAGCTTGCAGACCTAAAAGTTTGACGTATTCTGATGCTGGGGTAGATATAGATGCTGGTAACTTGTTGGTAAATGCTATTAAGCCATTGGCTGCGTCCACTACTCACAAGGGCTGTACAGCAGACCTTGGTGGCTTTGGAGGCTTCTTTGATCTCAAGGCTGCTGGATTCAAAGATCCTTTGCTTATCAGTGGTACAGATGGAGTGGGAACAAAACTCAAGATTGCACAGGCTGTTGGACTTCATAGTTCAGTGGGTATTGATCTGGTTGCAATGTGTGTGAATGACATTCTTGCTCATGGTGCCGAGCCATTGTTCTTCCTGGACTACTTTGCTACTGGCAGGCTGGATGTGGGTGTAGCCAAGGAGGTGATTCGTGGTATAGCACAAGGCTGTTCACAAGCTGGATGTGCTCTTTTAGGAGGTGAGACAGCGGAAATGCCAGGCATGTACTCATCTGGTGAATATGACATCGCTGGATTTGCTGTAGGTGCTGTTGAGCGAGACAAAGTTCTTCCTCGATCACAGAGTATCACTGCAGATGATGTTTTAATTGGTTTAGCTTCTTCTGGCATTCACAGTAACGGCTTTAGTTTAGTGAGGAAAATCATGGACAATGCTGGATTAAGTTACAATTCACCCAGTCCATTTAGCACAACTGAAGGGTTACAGTCCGTTACTAAACTCGGTGAAACTCTTCTTACGCCAACCAGGATTTACTGCAGTGCTGTTCTACCTCTAATGAACAATGGAAAGGTTAAGGCCTTTGCACATATAACAGGGGGAGGTCTGACTGAGAACATTCCACGTGTCCTACCTTCTGGTTTGGGCGTATCTCTAGATGCTAGTTTGTGGACTATGCCTCCAGTGTTTGGTTGGATATTTGGCCAGGGAAATGTTCCAACACAAGAGATGGCTAGGACATTCAATTGTGGCATTGGAGCAGTCCTTATTGTAGCAAAAGATACTGCTTCATCAGTAATGGAGCATTTCAAAGTGACTGAAGAACAGGCTTGGGTTATAGGAAAAGTTACTGAATGCACGGAAGAGAGCAATAGAGTGATTGTTAGAAATCTTGAAGATGTGCTTTGTAAATCTGCAGCAAAAGCAGACATCAAACAACAGGATAGTGCAAAAAGAGCAGTCAATGGACCTGTCaaaaggccaaaactaagcagtGGACAAACAGAACAACACATAGGTCAAGAAATGAAAGTGGGTGTTCTTATATCGGGATCAGGAACAAACTTACAAGCACTGATTGACCATAGCTTAAGGCAGGACAGCAGTGCTAACATTGTATTGGTCATTTCTAATGTACCTGGAGTCCAAGGATTGAAAAGGGCTGAGGCAGCTGGTATACCAACAAAAGTTATAAAGCACAAGGAGTTCAAAAGCCGTTTAGATTTTGACATGGCTGTGCATTCAGCATTGGAGGAGGCAGGAGTGGAATTGGTGTGTTTGGCAGGGTTTATGAGAATTGTTACAGCAGAGTTTGTTCGCAAGTGGCATGGCCGACTGCTGAATATCCATCCTTCATTGCTGCCTTCCTTTAAAGGCATGCATGCACACAAACTTGTGCTAGAGGCTGGTGTTTGTATATCAGGCTGCACTGTGCATTTTGTTGAGGAAGAGGTTGATGCCGGAGCAATAGTGACCCAGGAAGCAGTTCCTGTGTTGAACGGAGACACCATTGAAACACTTCAAGAACGAGTGAAATGCGCTGAACACAGAGCTTACCCACGAGCCATGGAACTACTAGCTAGTGGCAGAATGAAGCTAAATGATAACAACAAAGTACAGTGGATGTGGTAGCAATGGTACACTGCCTCAAATAGGATGACTACAGGGCTGTGTGCACATGCTAAACCACGTTCATGGACTACATCTGATCAGAAGATCTAAAATAAGTTAATGAAAAGTTAAAGGTGCTAGTCGGACTGAGTGAGTTAAGAAGCTATAAGCTTTGGAGCATTGATAGTTTGGTTGTACATGTAGAGTTATACAATGTGGAGTTGAAGAGCATTGCTGAACACTGCTTGCAGTTATAAACTGTTACTTTTGCTAGAAAACTGAACTAACTTATTGTTTGTTATTATTACTGACCAACTTGTGTTCTATTAAAGATATATCGTTGCCAAACAGTCTGCATCTTGGATTgatttacattgaataaccacAGCAAGCGTCTGATCCAAAGTGCTTGAAAGAGAGCAGggatggggtggggtgggtgggtCTTTTCTCGTGCCAGTAAGACTGGGGCATGGGTCTCCTCCCatataaaaattaactgaagaaaaaagttaactgcaacatatacgtTGTTGAGTAATGTCCAATGCCACCCTCAAAACATCTTGAGCTGGCAAACTAAACAGAACCCATGAGTGGGTCGCACAGaagatgcaaaaaaaaaaaaacgataatgGGAACTTGGTTATGCAATGTTCGCATGTAACCAAATAAAAATACCCCAGGTtcccaaataaaataaaaaaagcacTTCTTACCAATGGCTGGAGTAGTCACACCCTTGTATCGTCAgcacccccctccctccccccccccccccctccccccgccaaaaaaaaagtaaagaaataaaataaattcagaGCCAAGTGCTGGGGCTTTTAACTTGTATACAGCTTTTTGTGGTTTCAGCTTCGTAGAAGCGAAACCCACATTGTCGTCGTGTTGTAAGTAGGTAAgtgagtaagtaagtaagtacgtAATTCGGAAAGCCGACGTAATGCCGATGAGACGCGGACGCCGCAGTCGATGGTTTATTGACATGTCCGAAGTATTTTCGTGATAAGCGTTTTATCATGGGCCTGAGAACGAGGTTGTGAATTGGCAGTCGATATTTCTTCGCAGATAACATGTGAATCGTCGAAGCAACGTTTGTTTATGCGTTTCTCTGGGCGGTGGATTTCGGAGGAAAGTTTCATTAGCAatggttttgtgctattttagTCTGGGAACCAGACAGCTCTCGATGAAGGAGATatttcttgatgtgatttgtgcagAACTTTTCGAGAAACCACTTTCGAGCGTGTTAAGGACGTTAAGCGTAAACACCGTAGACAGGGCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64737	Trifunctional purine biosynthetic protein adenosine-3 OS=Mus musculus OX=10090 GN=Gart PE=1 SV=3
P22102	Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens OX=9606 GN=GART PE=1 SV=1
P21872	Trifunctional purine biosynthetic protein adenosine-3 OS=Gallus gallus OX=9031 GN=GART PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002833 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02769 all species →	AIRS_C	AIR synthase related protein, C-terminal domain	Domain	Interproscan
PF00586 all species →	AIRS	AIR synthase related protein, N-terminal domain	Domain	Interproscan
PF02843 all species →	GARS_C	Phosphoribosylglycinamide synthetase, C domain	Domain	Interproscan
PF00551 all species →	Formyl_trans_N	Formyl transferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004607 all species →	Family	Phosphoribosylglycinamide formyltransferase	Interproscan
IPR001555 all species →	Active_site	Phosphoribosylglycinamide formyltransferase, active site	Interproscan
IPR004733 all species →	Family	Phosphoribosylformylglycinamidine cyclo-ligase	Interproscan
IPR036921 all species →	Homologous_superfamily	PurM-like, N-terminal domain superfamily	Interproscan
IPR010918 all species →	Domain	PurM-like, C-terminal domain	Interproscan
IPR037123 all species →	Homologous_superfamily	Phosphoribosylglycinamide synthetase, C-domain superfamily	Interproscan
IPR016188 all species →	Domain	PurM-like, N-terminal domain	Interproscan
IPR036676 all species →	Homologous_superfamily	PurM-like, C-terminal domain superfamily	Interproscan
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR036477 all species →	Homologous_superfamily	Formyl transferase, N-terminal domain superfamily	Interproscan
IPR020560 all species →	Domain	Phosphoribosylglycinamide synthetase, C-domain	Interproscan
IPR002376 all species →	Domain	Formyl transferase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10520 all species →	TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004644 all species →	Molecular Function	phosphoribosylglycinamide formyltransferase activity	Interproscan
GO:0006189 all species →	Biological Process	'de novo' IMP biosynthetic process	Interproscan
GO:0004641 all species →	Molecular Function	phosphoribosylformylglycinamidine cyclo-ligase activity	Interproscan
GO:0004637 all species →	Molecular Function	phosphoribosylamine-glycine ligase activity	Interproscan
GO:0009113 all species →	Biological Process	purine nucleobase biosynthetic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0046084 all species →	Biological Process	adenine biosynthetic process	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_034151-T4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.