Gene detail

Detailed information of FUN_034294-T1 in Dendrogyra cylindrus

Genomic Location: contig_113:237266...253139
NR annotation: XP_022786656.1, bromodomain-containing protein 7-like [Stylophora pistillata]
Species abbreviation DCYLI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_034294-T1

ATGGGAAAGAAGCACAAGAGCAAGAAACATCACAAGAAAGGCACAGATGTCGCTGAAGAAAAATCCGAAAGGTCAGAGAAGGTCGAGAAAGCTGAGAAACCAATTAAACTAGTTCTTAAAGTTGGAAGTACCCAAGAAAAACTCACTACTAAGCCGGAGCCTCAAAGTTCGACAAGCAGAGCTTCACTGAATCCAGACAAAACAAAATCTAAAGAACATTcatcaaaaaagaagaagaaaaagagatcATCATCCAGAGAGAGAAAGAAGCCCAAGTTCGATCCAGGTTCTAGTGCCTGTCCATCGCCTTCATCAATCAGTAGCCATGAAAGATCAAAGAGGAAAAGAGACAGACATGAGATGGAAGGAGAGAGCAGTAGTGTTATTGATGCAGAAAGACCAATCAAGAAAATCTACATAAAACCAATTGAACCTCCAAATAGAAACAGCCCAGAAACTAGAAAAGTTGGTGgttatctgagagaaccagagatCTCACCTCTCCAGCTGTGTTTAGAAAACATCCACCGTACACTACAAAGGAAGGACACTCAAGGTTTCTTTGCATACCCTGTGAATGACACCATAGCCCCGGGATACTCCAACATCATCACGCGCCCAATGGACTTCAGCTCCATGAAATACAAGATTGATTCCAATGACTATCATTCTTTAGAGCAGTTTAGGGATGATTTCAACCTGATGTGCAACAATGCTATGATATACAATGCACCGGAGACAATTTACTACAAAGCAGCCAAGAAGCTCATCCAAACAGGATCCAAACTTTTGTCTCCTGACAAAATCCGGAACATGTACCGCAGTATTGGATATCCGATACCGGAATATGAAGGCAATGAATCTGAGGGGCGTGGATCAGATGAACCAATCGATGTTGACACAATAGACGCTGAGGAAAATCACGTCACACAGTCAACAAAGAGGACCAAACCAAGGAGTGAATCAAAGCACACCTCTGCTAGTCGTAAGATTCTTGCTCAAGTTCAGGAAGCGTCAAGACGAATGGCTGCCGAGCTGGAAGCTAAATATCCCAACAGTAAGGTTGGATTTCTACGACGAGATAAAGATGGAACTACGACGCTAGCTGTTGTGAACCCTGTGGACTCTGAAGCCCCGGAGTACCGTCACGTTAATCTTGGAGCAGCTGTGGGTAAAGTAGTCACCGGTTCACATACAACGGCTGGGTTTAAAGAAGACAAACGAAACAAGGCAACCCCAGTGTCTTATTTAATGTACGGACCTTATGGTTCGTTCGCTCCTTCGTACGACTCGTCAAGAGCCACTATAACAAAAGAACAATCAGACCTGCTGTACAGTACTTACGGTGATGACACTGGTATACACTATGCCAAAAGTCTCCAAGCCTTTGTTAAGGACGCTTCCTCGTTTTCACATGAAGCGGTGGATAGACTGCTGGACGCTCTCACTGAAGGAGCACATTCGAAATACCTGAAACAGATGGCCGAGATAGAAAAAGCCGGGGAAGAAAAACAAGCGAAAGAGAATGAAAATACCGAACAAAAAGTGGAAGTTAAAGCTTCTGCGGAAAGTGAGCCAAGTCAAGAAACGAACAAAACAGCCTCGACTGCGTCTGGAACAGATGAGAACTCTAAGGTTTCACTGCCGGCTTCCACTACTCCAAATTCTTCGTCCACTGGAGATGCAGCGAAAATTGATATTCAGTCGCTATTGTCTCTTGCGGACGAAGGGATCGATGTGTCTTTTCTGAAACCCTCAGACGAAACGTCAAGCAGCGACTCGCTGAGTTCCTTGCTGTCAGACAAGTTACACGCAACTGGAAAACTGTTAGACGACCTCCAAGAGGTACAGAGCGCGCGACTTAGTCACAGACCAGACGGCCCCGCGGGTCCTACCCCTGAGGCGGTCATTCGACCCTCATCTCAGGAAAAGATTATCGCGGATCGCGTGACGGAGAATCTAAAGGATCTTGCATCACAGGCTTGCCCAGAAGACGTCATTTCAGTAGACAGTATTCGTGCTGCTATCGGCGTAGGGCTAGTACCCAGTACCCAGCGCGGACAAAAACCTGAAGAAAAGACAGCGGTCGACGAAAGAGCAGAATCGGCCGAGCATAGCATGGAAAGCGCTGACTCGACGCTCCAAACATCGGCGGAACAGTCTTGA

Transcript

FUN_034294-T1

CTAACGCTGCTAAGCATCATGGGATGCTGTTTTCAATATGGCGACCACAGGGCATTGTTAAAACTCGAGAAAGCAGCAAAATTAAAGTGTATTTTTGTCAGTTTAGGAACAAGTCAAAAGTGTATCAAATGCTAGAAAGCCATGGGAAAGAAGCACAAGAGCAAGAAACATCACAAGAAAGGCACAGATGTCGCTGAAGAAAAATCCGAAAGGTCAGAGAAGGTCGAGAAAGCTGAGAAACCAATTAAACTAGTTCTTAAAGTTGGAAGTACCCAAGAAAAACTCACTACTAAGCCGGAGCCTCAAAGTTCGACAAGCAGAGCTTCACTGAATCCAGACAAAACAAAATCTAAAGAACATTcatcaaaaaagaagaagaaaaagagatcATCATCCAGAGAGAGAAAGAAGCCCAAGTTCGATCCAGGTTCTAGTGCCTGTCCATCGCCTTCATCAATCAGTAGCCATGAAAGATCAAAGAGGAAAAGAGACAGACATGAGATGGAAGGAGAGAGCAGTAGTGTTATTGATGCAGAAAGACCAATCAAGAAAATCTACATAAAACCAATTGAACCTCCAAATAGAAACAGCCCAGAAACTAGAAAAGTTGGTGgttatctgagagaaccagagatCTCACCTCTCCAGCTGTGTTTAGAAAACATCCACCGTACACTACAAAGGAAGGACACTCAAGGTTTCTTTGCATACCCTGTGAATGACACCATAGCCCCGGGATACTCCAACATCATCACGCGCCCAATGGACTTCAGCTCCATGAAATACAAGATTGATTCCAATGACTATCATTCTTTAGAGCAGTTTAGGGATGATTTCAACCTGATGTGCAACAATGCTATGATATACAATGCACCGGAGACAATTTACTACAAAGCAGCCAAGAAGCTCATCCAAACAGGATCCAAACTTTTGTCTCCTGACAAAATCCGGAACATGTACCGCAGTATTGGATATCCGATACCGGAATATGAAGGCAATGAATCTGAGGGGCGTGGATCAGATGAACCAATCGATGTTGACACAATAGACGCTGAGGAAAATCACGTCACACAGTCAACAAAGAGGACCAAACCAAGGAGTGAATCAAAGCACACCTCTGCTAGTCGTAAGATTCTTGCTCAAGTTCAGGAAGCGTCAAGACGAATGGCTGCCGAGCTGGAAGCTAAATATCCCAACAGTAAGGTTGGATTTCTACGACGAGATAAAGATGGAACTACGACGCTAGCTGTTGTGAACCCTGTGGACTCTGAAGCCCCGGAGTACCGTCACGTTAATCTTGGAGCAGCTGTGGGTAAAGTAGTCACCGGTTCACATACAACGGCTGGGTTTAAAGAAGACAAACGAAACAAGGCAACCCCAGTGTCTTATTTAATGTACGGACCTTATGGTTCGTTCGCTCCTTCGTACGACTCGTCAAGAGCCACTATAACAAAAGAACAATCAGACCTGCTGTACAGTACTTACGGTGATGACACTGGTATACACTATGCCAAAAGTCTCCAAGCCTTTGTTAAGGACGCTTCCTCGTTTTCACATGAAGCGGTGGATAGACTGCTGGACGCTCTCACTGAAGGAGCACATTCGAAATACCTGAAACAGATGGCCGAGATAGAAAAAGCCGGGGAAGAAAAACAAGCGAAAGAGAATGAAAATACCGAACAAAAAGTGGAAGTTAAAGCTTCTGCGGAAAGTGAGCCAAGTCAAGAAACGAACAAAACAGCCTCGACTGCGTCTGGAACAGATGAGAACTCTAAGGTTTCACTGCCGGCTTCCACTACTCCAAATTCTTCGTCCACTGGAGATGCAGCGAAAATTGATATTCAGTCGCTATTGTCTCTTGCGGACGAAGGGATCGATGTGTCTTTTCTGAAACCCTCAGACGAAACGTCAAGCAGCGACTCGCTGAGTTCCTTGCTGTCAGACAAGTTACACGCAACTGGAAAACTGTTAGACGACCTCCAAGAGGTACAGAGCGCGCGACTTAGTCACAGACCAGACGGCCCCGCGGGTCCTACCCCTGAGGCGGTCATTCGACCCTCATCTCAGGAAAAGATTATCGCGGATCGCGTGACGGAGAATCTAAAGGATCTTGCATCACAGGCTTGCCCAGAAGACGTCATTTCAGTAGACAGTATTCGTGCTGCTATCGGCGTAGGGCTAGTACCCAGTACCCAGCGCGGACAAAAACCTGAAGAAAAGACAGCGGTCGACGAAAGAGCAGAATCGGCCGAGCATAGCATGGAAAGCGCTGACTCGACGCTCCAAACATCGGCGGAACAGTCTTGACAAAACTCCTCGCGTTTGTAACTACATTTTAAGAAAGCTCTAAGCGTTatttataaaaagaaaaatgtaaaagaGCTGCATTGTATTTTTTTGTATGTTAATAAAAATGTGCTCAAATTAGTTTGCTCTTTGGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZKG2	Bromodomain-containing protein 7 OS=Gallus gallus OX=9031 GN=BRD7 PE=2 SV=1
Q9NPI1	Bromodomain-containing protein 7 OS=Homo sapiens OX=9606 GN=BRD7 PE=1 SV=1
Q5R8B0	Bromodomain-containing protein 7 OS=Pongo abelii OX=9601 GN=BRD7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004106 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF12024 all species →	DUF3512	Domain of unknown function (DUF3512)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR021900 all species →	Family	Protein of unknown function DUF3512	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR051831 all species →	Family	Bromodomain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22881 all species →	BROMODOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0070577 all species →	Molecular Function	lysine-acetylated histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11723	BRD7; bromodomain-containing protein 7	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.