Gene detail

Detailed information of FUN_034302-T1 in Dendrogyra cylindrus

Genomic Location: contig_113:316098...329543
NR annotation: XP_020632669.1, uncharacterized protein LOC110069486 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_034302-T1

ATGGCGAACTGGATAGGAAAACCCTGGATCGAGAAGGCCTTGAAGAGTAGAAGTGCAAACAGTTTGCCTAAAATTGCCAGAGCTCAGGTATTAAAGCTGGAGGAAACATCCAACAATTGTTTCATTGCAATTATTAGTGATAAAAAGCTCTTTGTGAAAGCGAGGTTCTCGCCAGCTGCCATTGAAGAGTTTGAAAGAGAGACGCATATAACAAGCCTAGCCGAGATCCAAGGGGGAttgatttttgtaaaaaaatattcagtGCAAGCCACTGCAGAAGATGAGTTGGATCAGGCAGAGTTTTTGATAAACATCAACCACTTTAAATTTGCTGGTGGTGAGGGTAACACCCAGTTTGGTAGTGACCTGCTGGACAGCTCAACACACCCTGAATTGCAGTCAAGGTTACGCCAACTGTGGAGAATAGAACAGCTCAGGAAACAACTTGATGATGAAGAAGACGCCAATTTCCCAGATTCAAAAGACACCGAACGGCTGGTTCTGAAGAGCCACGATAGCGTACATATTCCAGATGTGATGGAAAGGAAACTGGCTGAAATTCCAGAATGGAAGCCAAACTATTGTCCACCCCAAACATGCGAAATACAGAGCGTCTTCTCATCCACTCAGGAGCAAATTTGTGCTGAAACAGCAGAAAGTGCAGAATGCGAGACCGAAGGAAAAGGAATCGAGAAGCATAGCTCACAAAAACATAACGATAACCTGTTGGTAAGTTCAAGTTATGTCCCTTCTTCGCAAAAAAGTGTGGTTGTGGATCAACCGCTAAAAGGTCTTGTGCCTGAGGAGCTGTGTTCGTCATCAAGCGAGGCTTCGCAGCTTAGAGGAAGTAGCGAAGAATCGTACTCGATTCTTCAAGGAAGATCTTCTCCCGGCGGAAAAGCCCCGGATGTCAGCATTGTACCTTCCAGTCAGAATAGCCACGAGTATGAAATGGAACAGCCACTGCCGCATATTATTACGCCTCAACGGACTCAACTTCACTGCTCGTTGACAGAATCACAACTGGGAAATTTGTTAGAAACTAGCGTTTCATTTGATGAGGTCACCTCACCCCCCTGTTTTTCGGATGTTCCGTCTCCAACACAGGAGGGGTTTACTCAGATAAAACCCAGAAATGCTTGTCAAAGTGAGTCGATATCTAATAAACATTCGAGGCATACTGTTGTTACTCAACTCTCGTTATCGTCAACTCATAACTTGCCAGAAAAGAAATCTCCTCTTGAAAATCAAAGGAAGAACAGGACTACATTTGTAGAAAAAGTTTCAAAGAATGCCGATAAAGAAGGTACGGTTTCGTCTTCTGCAAGAGACATCATCAGTCATACTTCAAAGGGCAAAGAAGACTCAGAAAAAGCGAAAGTTGACTTTGATGCTCTGTTTTGTCAGAATACCTGGAAGCACTCCCAAAGACCCGCACTGGAGTTCAGTGCGGATTTACTTGAAATTGACAGGCGTCAATcaacaaaaaggaaaagaacTGAGGAAAATGACTCTGTGCATCAGACACGTTCATCAGCTTGCGTCAGACGAGGAAACAAGCTGTTGTTACCGGACAGTCCAGTTAGTCCAGACAGCACGTCTTGTTCAGTGAAGTCCAGCAGTCAATCCGGGTCTTACCATAGTCAGCACAGTCACCACTCGTCCAGTATGGTTAGGCCTGAAGACCTGTATTCACAACAGGAACTTCTCTCTCTTGATACATCCGGATTAGCAGGCTCCCTCAAAAGTCCACAAGAACTTCACAGCTCCAGTCCCAGTCTTCTGGGGAATTCCATGGAAGAGCCTTGTACTTTAAGTACTCCCAACTTCGACTCGCTTCCATCTTATCAAGTTCCTGCCGAGCACAAGGAAACACCATCAAGTGCTACCTTCCTCTCACCGATGGCACGATATCAAAGAGATAAGGTTTCTGTCGAGAAAAAGGGAGTTGCAGAAGTTACCTCATCCCCTATAACAAGTGTTCAAGATGACGAGCTCCTCACCAGCTCTACCCAAACACGGGAAGCCGAACATCACCAGGAGCCTGGAACTAGCTGGAACTTTGTGGAGAAAGCGTTAAAAACTTCGAAACAGAAACGTAAAACTAAAGCGCGTCGCAAGTTTAATTGGTTTTCAGATGCCTACTGA

Transcript

FUN_034302-T1

TGACATTGAGAGCACAACATCCAAAATGGCGAACTGGATAGGAAAACCCTGGATCGAGAAGGCCTTGAAGAGTAGAAGTGCAAACAGTTTGCCTAAAATTGCCAGAGCTCAGGTATTAAAGCTGGAGGAAACATCCAACAATTGTTTCATTGCAATTATTAGTGATAAAAAGCTCTTTGTGAAAGCGAGGTTCTCGCCAGCTGCCATTGAAGAGTTTGAAAGAGAGACGCATATAACAAGCCTAGCCGAGATCCAAGGGGGAttgatttttgtaaaaaaatattcagtGCAAGCCACTGCAGAAGATGAGTTGGATCAGGCAGAGTTTTTGATAAACATCAACCACTTTAAATTTGCTGGTGGTGAGGGTAACACCCAGTTTGGTAGTGACCTGCTGGACAGCTCAACACACCCTGAATTGCAGTCAAGGTTACGCCAACTGTGGAGAATAGAACAGCTCAGGAAACAACTTGATGATGAAGAAGACGCCAATTTCCCAGATTCAAAAGACACCGAACGGCTGGTTCTGAAGAGCCACGATAGCGTACATATTCCAGATGTGATGGAAAGGAAACTGGCTGAAATTCCAGAATGGAAGCCAAACTATTGTCCACCCCAAACATGCGAAATACAGAGCGTCTTCTCATCCACTCAGGAGCAAATTTGTGCTGAAACAGCAGAAAGTGCAGAATGCGAGACCGAAGGAAAAGGAATCGAGAAGCATAGCTCACAAAAACATAACGATAACCTGTTGGTAAGTTCAAGTTATGTCCCTTCTTCGCAAAAAAGTGTGGTTGTGGATCAACCGCTAAAAGGTCTTGTGCCTGAGGAGCTGTGTTCGTCATCAAGCGAGGCTTCGCAGCTTAGAGGAAGTAGCGAAGAATCGTACTCGATTCTTCAAGGAAGATCTTCTCCCGGCGGAAAAGCCCCGGATGTCAGCATTGTACCTTCCAGTCAGAATAGCCACGAGTATGAAATGGAACAGCCACTGCCGCATATTATTACGCCTCAACGGACTCAACTTCACTGCTCGTTGACAGAATCACAACTGGGAAATTTGTTAGAAACTAGCGTTTCATTTGATGAGGTCACCTCACCCCCCTGTTTTTCGGATGTTCCGTCTCCAACACAGGAGGGGTTTACTCAGATAAAACCCAGAAATGCTTGTCAAAGTGAGTCGATATCTAATAAACATTCGAGGCATACTGTTGTTACTCAACTCTCGTTATCGTCAACTCATAACTTGCCAGAAAAGAAATCTCCTCTTGAAAATCAAAGGAAGAACAGGACTACATTTGTAGAAAAAGTTTCAAAGAATGCCGATAAAGAAGGTACGGTTTCGTCTTCTGCAAGAGACATCATCAGTCATACTTCAAAGGGCAAAGAAGACTCAGAAAAAGCGAAAGTTGACTTTGATGCTCTGTTTTGTCAGAATACCTGGAAGCACTCCCAAAGACCCGCACTGGAGTTCAGTGCGGATTTACTTGAAATTGACAGGCGTCAATcaacaaaaaggaaaagaacTGAGGAAAATGACTCTGTGCATCAGACACGTTCATCAGCTTGCGTCAGACGAGGAAACAAGCTGTTGTTACCGGACAGTCCAGTTAGTCCAGACAGCACGTCTTGTTCAGTGAAGTCCAGCAGTCAATCCGGGTCTTACCATAGTCAGCACAGTCACCACTCGTCCAGTATGGTTAGGCCTGAAGACCTGTATTCACAACAGGAACTTCTCTCTCTTGATACATCCGGATTAGCAGGCTCCCTCAAAAGTCCACAAGAACTTCACAGCTCCAGTCCCAGTCTTCTGGGGAATTCCATGGAAGAGCCTTGTACTTTAAGTACTCCCAACTTCGACTCGCTTCCATCTTATCAAGTTCCTGCCGAGCACAAGGAAACACCATCAAGTGCTACCTTCCTCTCACCGATGGCACGATATCAAAGAGATAAGGTTTCTGTCGAGAAAAAGGGAGTTGCAGAAGTTACCTCATCCCCTATAACAAGTGTTCAAGATGACGAGCTCCTCACCAGCTCTACCCAAACACGGGAAGCCGAACATCACCAGGAGCCTGGAACTAGCTGGAACTTTGTGGAGAAAGCGTTAAAAACTTCGAAACAGAAACGTAAAACTAAAGCGCGTCGCAAGTTTAATTGGTTTTCAGATGCCTACTGAGTGACGTTAAAATTCGTTAATTGTTTTTGTATATAATGCTCAGATAGGTCCATTTATGGTTCACttgtaaataaaatatcaaCCGTAGTTATGTTAGTTAGCTCACGTCGTAGGGATGTATTTAAGAGTGATTTCGTAATACCATTCCAAGTCTCGCGTTTAATATATACTTTTTATGTTAAAAGTGTACTTTGTGTGATGAAAGAGCAAAAACTTGCTTTGAATAGTAAAAGATTCAAAAGATCTGTATCTCGACATAAAAGGACGAGAACATGTAATATATAATAATCGATTAGGTTTTCATCAGCAAGGAACAGttcattttattgatttcaGTCAGTCTAATGCTTTGCAATATTTCAAATCGTAACTTTTGACATTGACAAATATAAAGAATAGATATGTAGTTgactagaaaaaaaaattgttcctATTATAGCCATTATATATGGCTACAAATGTCAgtgatatgtacatgtatttgcaGGTATTCATACGAAATTCCACACCAAACAATAGTTGTGTTTCTCCACCGGTCATAGTCGAAATCATTATCTTGTTAAGTGCTAGATGCCTTGCAATAAGGTAAAGGGTGTGATAAATAGCTTTAGTTCATTAacacaaaacattttttaacGTTTTCTATTGTAAAAAGGAATTGCACTTCGTGGTAGGTTTTAGTAGGGTCGGTCGgtcaataaaatatatttaaatagcTCTAAATAGGCTAAAGAGGATGGAACGTATCCgcgtgacgtcacggcagccatactggtgttccaaaacaaagaaacggcggccatattggtgtaccaagccattccaccgggaattaaaatctatttttattcaaaaaaacGTCTCTTGtttaggtaaaccaatatggccgctggtgaCGTGAGTGAATACGTTCTAAAGAACAAACAATACAAAGAAGAGACAACTAGTTCGTAAAACTGATACTCAAGttcaataatattaatataataatataataataaattgaACTTCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008796 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10341 all species →	TPP1	Shelterin complex subunit, TPP1/ACD	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019437 all species →	Domain	Shelterin complex subunit TPP1/Est3	Interproscan
IPR028631 all species →	Family	Adrenocortical dysplasia protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14487 all species →	ADRENOCORTICAL DYSPLASIA PROTEIN ACD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000781 all species →	Cellular Component	chromosome, telomeric region	Interproscan
GO:0005697 all species →	Cellular Component	telomerase holoenzyme complex	Interproscan
GO:0007004 all species →	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0051973 all species →	Biological Process	obsolete positive regulation of telomerase activity	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0000783 all species →	Cellular Component	nuclear telomere cap complex	Interproscan
GO:0016233 all species →	Biological Process	telomere capping	Interproscan
GO:0032211 all species →	Biological Process	negative regulation of telomere maintenance via telomerase	Interproscan
GO:0070187 all species →	Cellular Component	shelterin complex	Interproscan
GO:0070198 all species →	Biological Process	protein localization to chromosome, telomeric region	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_034302-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.