Detailed information of FUN_034323-T1 in Siderastrea siderea

Genomic Location: contig_37:5286174...5309625
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05761
all species →		5_nucleotid5' nucleotidase familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008380
all species →		FamilyHAD-superfamily hydrolase, subfamily IG, 5'-nucleotidaseInterproscan
IPR016695
all species →		FamilyPurine 5'-nucleotidaseInterproscan
IPR023214
all species →		Homologous_superfamilyHAD superfamilyInterproscan
IPR036412
all species →		Homologous_superfamilyHAD-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12103
all species →		5'-NUCLEOTIDASE DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008253
all species →		Molecular Function5'-nucleotidase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_034323-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_034323-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
35TPM > 0
7Conditions
1,221.9Max TPM
116.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 8 204.02 1,221.94
holobiont · low.pH Control.temp 20 6 73.42 400.72
holobiont · control.pH_high.temp 20 7 118.15 618.25
holobiont · control.pH Control.temp 19 8 101.60 517.86
Whole organism 4 4 9.54 14.26
unannotated 1 1 4.85 4.85
live coral tissue/skeleton 1 1 11.17 11.17

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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