Detailed information of FUN_034326-T1 in Siderastrea siderea

Genomic Location: contig_37:5321026...5323544
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07247
all species →		AATaseAlcohol acetyltransferaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023213
all species →		Homologous_superfamilyChloramphenicol acetyltransferase-like domain superfamilyInterproscan
IPR010828
all species →		FamilyAlcohol acetyltransferase/N-acetyltransferaseInterproscan
IPR052058
all species →		FamilyAlcohol O-acetyltransferase-related proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR28037
all species →		ALCOHOL O-ACETYLTRANSFERASE 1-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_034326-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_034326-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_034326-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
21TPM > 0
7Conditions
61.2Max TPM
3.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 5.52 61.22
holobiont · low.pH Control.temp 20 4 4.31 37.94
holobiont · control.pH_high.temp 20 3 0.90 10.23
holobiont · control.pH Control.temp 19 3 1.23 11.96
Whole organism 4 4 1.85 3.38
unannotated 1 1 3.80 3.80
live coral tissue/skeleton 1 1 1.78 1.78

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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