Gene detail

Detailed information of FUN_034458-T1 in Acropora pulchra

Genomic Location: ptg000024l:9021435...9037181
NR annotation: XP_044167079.1, LOW QUALITY PROTEIN: DNA-dependent protein kinase catalytic subunit-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_034458-T1

ATGGTGCAAGCTTTGATGGCAATGGTTAACTTCTGTGATGACTGCCTGAGGAAGAACGAAGAAGATACTGGTGTGCCTGTGGAGGTCGACACGAAGCTGTTTCCTGGAATAGTTGTACGGTACATGTTAAAAGCCATGTGTTATGGTTCAGATCAGGCTCTTCAGAGGTTTCCAAGGCTCCTTCAGATCGTAGAGATGTATCCTGACACTGACACCGTACAAGCTTTCATCACAAAGGCAGCAGTTGTCCCTTCCTGGATGTTTATTGGTTGGATTAATCAGATGCTTGCTATCTTGGATAAACGTGAGGGCAAAGCTGTACAGGCAATATTGTGGGAAATTGCACAAACCTACCCTCAAGCTCTTTGGTATCCATTTAAGATAAGCAGTGAACAGTTTGTGTTTGATAACAGCAAGGAAGGAAAAACTAGTCAGGACGCAGTTAAAAGTCTGCAGTCAGCGTTGGAGAGTCCATTGATGAATGACTTTATTTCTGCTTTGGAGCAGCTCACAGATCCAGAGATGTCTTTTAAGGATTGGTGCGATGGATCGATGAGGCAGTTACTTGAAAACAAAGATAAGAGAACGGATGCTCAAGCCATTAGAGATTGCTATAAAAGTATGTTCCAGAACTTGTTTGAATCTGGAACGAGGGCACAGAATACATCGCAAATACGGGGGAATGACTTTGGCCCTGTTAGGAAAAGGTTTGCTCAGGAATTTTCCGGTGAAGTTCAGAAATTGTTTGGTAAAGAGGGGGAAAAACTCATCGGACTCAAAGTTAACCAATTTATGAATCAGGGGAGAGCGGTTCATCGGAAGATGGAGGAGAAAGGATCCCGCTCCCGTCCGGTGTCAAATCTTAAGGATTACTCTCCTTGGTTGTTTCATTTTCAGTCTATTAACTACACACATGCTTTAGAGATTCCTGGGCAGTATACTGGACGAGAAAAACCCCTTCCTGAGTATCACGTTAAAATCACAGGGTTCGATGAAAGGGTACTGATCTTGTCGTCAATTCGTAAACCCAAGCGCATCATCATTCGAGGGGACGATGAAAAGGATCACTTTTTTTTGGTCAAAGGTGGAGAGGATTTACGACTGGATCAGAGGATCGAGCAACTGTTTGGCCTGATGAACGACGTCATGACCAGTTATCCAGCATGCAGCCAAAGAGGCCTAAGGCTGAAGACATACCAAGTCATCCCCATGACTCCTCGAGTGGGGTTGATTGAGTGGATACAGAACACCAAGCCATTCAAAGAGGTGCTGAAAGAAGCCATGACACCGACTGAGCGTGACAACTACGAGGGAAACGGTGGTCCGTGTAAGCGCCATACAGCATGGATTGGAAAGTTTAAAGGTAGCAAGACCTTAGACAGTGTTTACGGCGAAATGTACAAGAAAGCAAATCGAACTGAAACGGAAAAAAGCTTTCAGCAAACGGTGGGACTAGTGCCTTGGGACCTGCTCAGGCGCTCTTTTCTCAAACTCGCTGCCTCTCCTGAAGCATTCCTCATCCTTAGGTCGCATTTTGCGAAAACGCATTCATGTTTGTCGATTTGTCAATACATTTTGGGTATCGGCGATCGCCATTTGTCAAACTTTATGGTTGACATGGAAACGGGAGAAATGATTGGAATTGACTTTGGCCACGCCTTCGGTTCGGCCACGCAGTTTCTTCGTGTGCCAGAACTGATGCCTTTCAGACTAACGCGTCAATTTATCAACCTGATGTTACCATTGAAAGAGAGTGGAACCTTGCAGAGCGTCATGGTGCATACATTGAGAGCTTTGAGAAGTAACCACGAACTTCTCGTTAACACAATGGACGTATTCATCAAGGAGCCTTCCCTAGATTGGCAGGTGTTTGCTCGTAGACAAGCCAGGTCACAAGGAATAAACACAGATGATGGCGATGTTGCTTGGTATCCTCGACAGAAGATACAAAATGCTAAAAAGAAATTAGAAGGATTCAACCCTGCTTATGTTATGAGGGATGATCTTGCGTTAGGCCACGAGGCAACTTCCTGGTATAAATTTATGGAAGCCGTGTGTCTTGGAGATGCAAAGGCAAATATAAGAGCTCGCGAACCAGAAAGTGGTTTATCAGTAGAGAGTCAAGTTGCTTGTCTTATTGATCACGCAACAGATCCAAATATTCTCGGACGAACTTACGCTGGGTGGGAACCGTGGATGTAA

Transcript

FUN_034458-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8QGX4	DNA-dependent protein kinase catalytic subunit OS=Gallus gallus OX=9031 GN=PRKDC PE=2 SV=1
Q9DEI1	DNA-dependent protein kinase catalytic subunit OS=Xenopus laevis OX=8355 GN=prkdc PE=2 SV=1
Q8WN22	DNA-dependent protein kinase catalytic subunit OS=Canis lupus familiaris OX=9615 GN=PRKDC PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001506 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02260 all species →	FATC	FATC domain	Family	Interproscan
PF00454 all species →	PI3_PI4_kinase	Phosphatidylinositol 3- and 4-kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003152 all species →	Domain	FATC domain	Interproscan
IPR014009 all species →	Domain	PIK-related kinase	Interproscan
IPR050517 all species →	Family	DNA Damage Response and Repair Kinase	Interproscan
IPR000403 all species →	Domain	Phosphatidylinositol 3-/4-kinase, catalytic domain	Interproscan
IPR037706 all species →	Domain	DNA-dependent protein kinase catalytic subunit, catalytic domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036940 all species →	Homologous_superfamily	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11139 all species →	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004677 all species →	Molecular Function	DNA-dependent protein kinase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_034458-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.