Gene detail

Detailed information of FUN_034482-T1 in Dendrogyra cylindrus

Genomic Location: contig_115:266755...277835
NR annotation: XP_020628914.1, tumor necrosis factor receptor superfamily member 1A-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_034482-T1

CTTCTGCGAGCAATTCCTCATGCAAGATGTACCTAAacgaaaaaatgatatttatagGAGTTTTAAAGTTCGCACAAGTAAACTGGACAAGAAAATATCGACTTAAATTTAACATTTAGCAGGAGTACCCAACGGATCCGCTCGACAAAATATCCGCTCTGCAGGCCGAACTTCAGCTGGCTGGCAATTTTTGAAATGAGATCGAGCGCTTGCTGGGACCATTTTTCTTAGAGAAAATTTGCTGGGAGTTTGTAAAATATCGATTGTAGCTGgagaaaaaacaaccaaaatatcTCTGCTGGCTAAAACAGACGCGCCGCGATAAAGAATTCAATAATTAactttaaacaacaaaaagtAAGCTATTActttatttcctttgttttcgtCGCTCATTCTGCCATCAGTGAAGAGATAAACCAGATCTGTCTCCCTTTTTGTGTGTAATACGAGCATGTGTATGATTTTAGCAGTTGATCGAGCGAGCGCGAGCGGACCCAAAAAGCGAATGCGTGGATTTTCGAGAGTCATGTCGCAGATGTCGCACCCGCTTATCTATCGTTTTATGGAGTAACTACGCACAGGATAATCAGCTCCACCGATATAACTCTAATCTTGGTGAGTATTTAGTTGTCCACTCTCTCTGCTGATTAAATAGCTTTGAGCAGTTTTAACGGCTTTTGATATCTTGTTCAACTTTTCAGCTTGCCGCCACGATGGAATATAGAGATTCAAGACATTTAAGGGGCGTATCACGGCTCAGTGTCACGGTGCAAAGCTATGTCGTCTCTACTCAACACCAATGTCTTTATTCTGCTGTGGGTCTCTTCCCTTTGCACGTTTTCAGCACAAGTAGCATCTAGCCGGAGGTGCAGATGGAACCAGCTTACTATCCTGAGACCCAAGACAGTTGAATGCTTGGACTGTCCCGAATGTCCCGAGGGTCAAGGCTTGGTCCCGCAGTGCGGGTCACGTGTCACAGGTGATGTTGCTGTGAATTGCGTGCAGTGCAAAGCAGGTGAAGCGTACTCCGATAAGCACGACTTTTCTTCATGTAAGCCATGCACCATCTGCGACCCAAACGAAGAGAAGATCAGTCCTTGTACTGCAACGAAGAACGCGGTTTGCGGAAAGTGCAATGCTGGTTACTATCGAGCTGTAACCGGCGACTGTCACCCGTGTTCTTGGTGTTGTACTGACAGTAAAAAAGGGGACGAAGATATAGAGAAACAGTGTAGTGAACAAAGCAACCTTCCAGCCAATCAAATATGCCGCTACGATGTCAACACCATCAAGTGCGCACCTGAAGCAAGTAGCACGACTGGGCATGCTACCTCGGCAGTGACCGCAAAACCTGCGGGCTCGCAAGGCATGAGAACTACTGAGGATCGAATAATCAATGGCGGGGCTTGGCTGATTATATTTGGTGTTGCTTTGGCTGTGTGCCTTTTAATAGGCATAACGGTTATTTACTATCGCAAAAAGCAAGTGCTGTCTCAATTGTTGTGTGGCGCACCTGGCCTTAAAGCTACAGTTCCTACACAAGTGGTTGGTCACGAGTCACCATCTGCTTCGGTCGTGATCAGTAGAACGTCAACTAAAGGACAGATAGTGTAAGGCCAGCCGACCGGGAAGAAATAAAAGTGGTGGCACTGGGACTCTACTTGTTCGGTTTATGTTTCGTCACATTATGTACGTAAAGCGCTGCCATGTGTAAACAGACCCTGCACGGGTACTAACTAAGGATAAAACTGTATTAAGTGACAGAATGTCGCTGGATATGTTGAACGGACAAAACGTTGCGTCACCAGTTTTAAAATTCCGTTAGAAAAAGAAATGACTGTCTTAACGCGCTCCCAGGGATCCTGTTcccttgttttttttgttacttAAAAATAATTCTCGCTTGCAAAAATCCGCCTAACTAATCCGAAAACCCACCCCTGATAGGGCCTCAGCAAGAGATACAATAGatcaatttcgatatattaaaattcagctcCGGTAAATAAACTATAAGCTTGTGGGGTTTGTTCCCCGGAGCCTCATAGTGATGGCTATTATTTTGGGCTGAATTTTACATTCATCGATATTGGGCAATTCCTATTTGTCGATGTGTCTATGTGTGCCAGGAGAAACCATTCAAAGACACACAACGATTTGTATCGTTACTGTACGCGAGGCTCTATCAGCTTGTTCCACCCGGTCCATGCAATCAGTATTCCATGCGGACTGGGACACTTGCGAAGTTTAGAGTCAGCTATAGTGCATCTGTTCATTGACAAAGTGAGCGTTTGATACTCGAAGTTCTTCACGGAACCAGAGTTACTATGGCACTACTGTCAGTGTACCCGCGCAACTATTAAAAAGAGGACAGACGCAGATAAACTGACTACTGTAGTTTTCTTGTGATACCAAATTAAAATGGGCTTGAGTTGATAAAGTACGCTTTGTAGGTACATGTTGTCGTTTGAGAAATATATTTTCATTGCCGGATCCAAAGGTACTCAAACTTAAGGGGCAGGGGCATGAAAACCGGCGAAGCCGACTCCTTTCTTGCCGGAAAACATAATGAAGTGGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047526	Family	Tumor necrosis factor receptor superfamily member 19/27/EDAR	Interproscan
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12120	TNFR-CYS DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0046330	Biological Process	positive regulation of JNK cascade	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05142	TNFRSF4, OX40, CD134; tumor necrosis factor receptor superfamily member 4	-	CD molecules	ko04090	deepkoala