Gene detail

Detailed information of FUN_034694-T1 in Dendrogyra cylindrus

Genomic Location: contig_118:22224...37546
NR annotation: CAH3135700.1, unnamed protein product [Pocillopora meandrina]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_034694-T1

ATGGAGGACCAACGAAGACTGCATTTTACTGAAAGCTCTCAAGAATTACAGATAGAGCTCCATGGCGAGGGGAATTCTCATGAGAGATCTAAACTTCCAAGTAAAGACTATGAGAGCCTTGATTATGATGTTTGCTACAACAAGCCTTTTTCACAGATGCTTGCATCAAGAGATAAAAAGTCACTATGGGGACAAGAGATCGTCAGATGGTTAGTGACAGGTGCCATTGGAGTACTGACAGGCCTGGTTGctgtttttattgattattttgtGACGCTTTTAACCCAGTGGAAGTTTGACACCATTCACAAATCTCTTAAGGAGTGTACTCCCTCAGGTTGTTTAGGGGTAACACTTCTTATTTTGATGACATTTAATGGCATATTCTGTCTTATAGCTGGGATTCTTTGTGCTATTGAGCCTGTAGCAGCTGGAAGCGGAATTCCTGAAATCAAGTGTTACTTAAATGGAGTTAAGGTGCCTCATGTGGTGCGACTTAAAACTCTCATATGCAAGGCAGTTGGTGTGCTGTTCAGTGTGGCTGGAGgtttatttGTTGGTAAAGAAGGACCTATGATCCACAGTGGTGCAATTATAGGAGCAGGAGTACCTCAGTTTCAAAGTATTGCATTtagaaaaataaagtttgactTTCCCTACTTCCGAACAGACAGAGAGAAGAGAGATTTTGTGTCAGGAGGTGCAGCAGCTGGGGTAGCAGCGGCATTTGGGGCACCCATTGGAGGGGTCCTATTCAGCTTGGAGGAAGGAAGCTCTTTTTGGAACCAAGGACTTACATGGAGAAGTtttttctgTTCCATGGCTTCCACATTCACCCTGAACTTTTGTTTGTCTGGCATCCTCGGTTATGGCTGGGGCTCATTTAATCAGCCTGGCTTGCTCAACTTTGGAGTCTTTAGTtgCAGCAAAGGAACAGAGAAGTGTAATCTGTGGAACATACAAGACGTAGTGATTTTTATTGCTATGGGTTTTGTTGGTGGTCTTCTTGGAGCATGGTTCAATGCGTTGAATAAGCATCTCACAGTCCATCGCATCTTGCATGTCTACTCACGTGCAAAGCATGTCAGGATTCTTGAAGCAGTTCTGGTTGGTTTTATAACCACGTCAGTTGCATTCTTTGGTCCAATTTACCTTGCACAGTGTAAGACACTTCCTCCGGGAAGCACTAATGGGAATAACACAAAGCCTTATTTTTGTCAAGATGGACAGTACAATGACATGGCAACATTATTCTTCACCTCTCAAGAATCAGCAATCAGACAGCTTTTTCACCTTGATGGTGCCTTCAGTTTGACGTCACTGTGGATCTTTTTTATCTGTTTCTACTTCCTGGCCTGTTGGACGTATGGAGCCAGTGTTCCTAGTGGTCTGTTTGTTCCTTGTTTGTTGTGTGGTGCAGCTTATGGCCGGTTTATTGGAGAGCTATGCAGGATGCTAGGATATCAGCACACATATCATGGTACATTCGCGCTGATAGGAGCTGCATCTTTCTTGGGCGGGGTCGTGCGCATGACAATCAGCCTGACTGTCATACTAATAGAATCAACCAATGAAATCAGCTATGGTCTGCCAATCATGATTACGCTTATGGTGGCAAAGTGGTCAGGGGATTTGTTTAATGAAGGACTTTACGACATCCACATCAAATTAAAGAGTGTTCCTCTTCTAGAATGGACTGCTCCTCAAGAAATGTACAGATTAAAAGCCTCTGACATCATGGAGTCTTGTCTGTCATATATTTATCCTCACACAAGAATTCACTCGATTGTTGGAATTCTCAAGACCACAGCGCACAATGCTTTCCCAGTAGTGACTATTGACAAAAATACTCAACAGGTCACCAATGAAAGTAACTTTGTGGACATCGATTCATCTAATGAGCGATTTGCTCGTACAACTACGTTTTCCAGCTTAACAAGTGAACAGAAGTTGCGACGCACTTTAACAAGTGGTGCAGAGAGCCATTTACTGCATAGGATTAGGACTGGTTCAGAACACCATCCAACGAGTATGCACATCAATGTCAAAGGAAAGAGACTGAAAAGCGAGGGTGATCAAGATTCCCTGCAATTCTCAACCTCTGCTCCCATGGTCTCTAATTTGCTTATTAACTACTCAGAACAGCACAGAGTGACAGTTgatcatgatgatgatgatGTCCATTACAGTGCATCTCTCCCAGGTGCTAGTGCTGCGCCAGCCCCTACTGTAAGGGACACGGAGGAAGAGGAGCCCCAGGCCCTAATGTTCCATGGGATCATCCTCAGGTCACAACTGGTAACTCTTCTCAAGAAAAGAGTTTTTTACTCAGAAAATGCACAGAAACCTGATCGTCCAGAACTCAATTTTGCAAGTATGACAGAAGAATACCCTAGGTTTCCGGACATTCATGATCTACACATTGAATTTGAAGACCAGCGAAAAATTATGGATGTAACTCCTTATATGAACCCATGCCCGTATATGGTGTTCCCTTGGACTCCTGTGCCACTGGTTTTCAACCTGTTTAGAACCATGGGCCTGCGGCATTTGATAGTGGTTAACACCAAGGGGCAGCTTGTGGGAATGATAACAAGATACAATTTAACTCATGAATACATGGAGCACTGCCTCGAGAACCTTGCCACCAACTAG

Transcript

FUN_034694-T1

AGTCTACTCTCTGCCTCCGATGTAGTTCGAACCATCGACAACGTCGACAACAGCCTTCCAGGCCGGCGGTTCCCAGCTGGAGGAagttgttttagaaaaaaggCATAGTTTGAACTTTCTGATGAGCTACAAACTGCAGAGTATCCCAAATTTGTTGGCTGTTCTTTTTGTCATTCAGTGGCCATTCATAATTCCGTGCAATCAACATGGAGGACCAACGAAGACTGCATTTTACTGAAAGCTCTCAAGAATTACAGATAGAGCTCCATGGCGAGGGGAATTCTCATGAGAGATCTAAACTTCCAAGTAAAGACTATGAGAGCCTTGATTATGATGTTTGCTACAACAAGCCTTTTTCACAGATGCTTGCATCAAGAGATAAAAAGTCACTATGGGGACAAGAGATCGTCAGATGGTTAGTGACAGGTGCCATTGGAGTACTGACAGGCCTGGTTGctgtttttattgattattttgtGACGCTTTTAACCCAGTGGAAGTTTGACACCATTCACAAATCTCTTAAGGAGTGTACTCCCTCAGGTTGTTTAGGGGTAACACTTCTTATTTTGATGACATTTAATGGCATATTCTGTCTTATAGCTGGGATTCTTTGTGCTATTGAGCCTGTAGCAGCTGGAAGCGGAATTCCTGAAATCAAGTGTTACTTAAATGGAGTTAAGGTGCCTCATGTGGTGCGACTTAAAACTCTCATATGCAAGGCAGTTGGTGTGCTGTTCAGTGTGGCTGGAGgtttatttGTTGGTAAAGAAGGACCTATGATCCACAGTGGTGCAATTATAGGAGCAGGAGTACCTCAGTTTCAAAGTATTGCATTtagaaaaataaagtttgactTTCCCTACTTCCGAACAGACAGAGAGAAGAGAGATTTTGTGTCAGGAGGTGCAGCAGCTGGGGTAGCAGCGGCATTTGGGGCACCCATTGGAGGGGTCCTATTCAGCTTGGAGGAAGGAAGCTCTTTTTGGAACCAAGGACTTACATGGAGAAGTtttttctgTTCCATGGCTTCCACATTCACCCTGAACTTTTGTTTGTCTGGCATCCTCGGTTATGGCTGGGGCTCATTTAATCAGCCTGGCTTGCTCAACTTTGGAGTCTTTAGTtgCAGCAAAGGAACAGAGAAGTGTAATCTGTGGAACATACAAGACGTAGTGATTTTTATTGCTATGGGTTTTGTTGGTGGTCTTCTTGGAGCATGGTTCAATGCGTTGAATAAGCATCTCACAGTCCATCGCATCTTGCATGTCTACTCACGTGCAAAGCATGTCAGGATTCTTGAAGCAGTTCTGGTTGGTTTTATAACCACGTCAGTTGCATTCTTTGGTCCAATTTACCTTGCACAGTGTAAGACACTTCCTCCGGGAAGCACTAATGGGAATAACACAAAGCCTTATTTTTGTCAAGATGGACAGTACAATGACATGGCAACATTATTCTTCACCTCTCAAGAATCAGCAATCAGACAGCTTTTTCACCTTGATGGTGCCTTCAGTTTGACGTCACTGTGGATCTTTTTTATCTGTTTCTACTTCCTGGCCTGTTGGACGTATGGAGCCAGTGTTCCTAGTGGTCTGTTTGTTCCTTGTTTGTTGTGTGGTGCAGCTTATGGCCGGTTTATTGGAGAGCTATGCAGGATGCTAGGATATCAGCACACATATCATGGTACATTCGCGCTGATAGGAGCTGCATCTTTCTTGGGCGGGGTCGTGCGCATGACAATCAGCCTGACTGTCATACTAATAGAATCAACCAATGAAATCAGCTATGGTCTGCCAATCATGATTACGCTTATGGTGGCAAAGTGGTCAGGGGATTTGTTTAATGAAGGACTTTACGACATCCACATCAAATTAAAGAGTGTTCCTCTTCTAGAATGGACTGCTCCTCAAGAAATGTACAGATTAAAAGCCTCTGACATCATGGAGTCTTGTCTGTCATATATTTATCCTCACACAAGAATTCACTCGATTGTTGGAATTCTCAAGACCACAGCGCACAATGCTTTCCCAGTAGTGACTATTGACAAAAATACTCAACAGGTCACCAATGAAAGTAACTTTGTGGACATCGATTCATCTAATGAGCGATTTGCTCGTACAACTACGTTTTCCAGCTTAACAAGTGAACAGAAGTTGCGACGCACTTTAACAAGTGGTGCAGAGAGCCATTTACTGCATAGGATTAGGACTGGTTCAGAACACCATCCAACGAGTATGCACATCAATGTCAAAGGAAAGAGACTGAAAAGCGAGGGTGATCAAGATTCCCTGCAATTCTCAACCTCTGCTCCCATGGTCTCTAATTTGCTTATTAACTACTCAGAACAGCACAGAGTGACAGTTgatcatgatgatgatgatGTCCATTACAGTGCATCTCTCCCAGGTGCTAGTGCTGCGCCAGCCCCTACTGTAAGGGACACGGAGGAAGAGGAGCCCCAGGCCCTAATGTTCCATGGGATCATCCTCAGGTCACAACTGGTAACTCTTCTCAAGAAAAGAGTTTTTTACTCAGAAAATGCACAGAAACCTGATCGTCCAGAACTCAATTTTGCAAGTATGACAGAAGAATACCCTAGGTTTCCGGACATTCATGATCTACACATTGAATTTGAAGACCAGCGAAAAATTATGGATGTAACTCCTTATATGAACCCATGCCCGTATATGGTGTTCCCTTGGACTCCTGTGCCACTGGTTTTCAACCTGTTTAGAACCATGGGCCTGCGGCATTTGATAGTGGTTAACACCAAGGGGCAGCTTGTGGGAATGATAACAAGATACAATTTAACTCATGAATACATGGAGCACTGCCTCGAGAACCTTGCCACCAACTAGACAGTTAAAATAATTTCAAATAAATTTAGCACATAAATTTATATAACAACaaattttaaaagattttttttaaaaaattgttttatttaactTAGCTTTTAATTCAATGTAATGATCTATTCATGACCTGTTGTAACTTATTTTAATAGTAAAATGAAGCAATTTTCTCTTATGGAGAAATTTTACAGAAAATGGAATAATATTGTTGATGCCAGGACTCAAAAATTGGCAGCTCATCTTCTGACCACCATCATTCATTCTCTTAAATTACTTTCAGTAGATTGCAAGCCGTCACCAATGTGGGAGCAAAAATTTGTTAATTATGTAAATTGATAGTAAAAATGAAAAGGATTGAGCACTTGTAATGCTCATGACTCGTGCTTGACCCTctctacttttttttttttgggggggggggggggggggctgcctGCACATGTGGCATAGCCACTTTCTCATCAAACCTGTAAAAGTTCCTTGTTATTCCTTCGCTTTCTTCATAGTTAGTAGAGtagactggttatgaaacccggtgaacttcaaagaaataactCTATGCTTTCTTGAATCATAGAAGCGTTAGGGAAAGAGACTGCTCATGGTCTAAAGACAGGGATAGGTAATCTTTGTTCAAAGAAAAACTGATTTTAAGGTAGTTTATCACTACACATACATGAATGCAGGTGTTTACATACTAAGGTGTTTACATACTTCCTTTACATACTATGTATGTAAAGGAAATGTTTCTAATTTGTACTGATAGTAAATATTAGATGTATTCTATAAGAAACTGTCCCTGATTTTCAGTTTTAAAAGACTAGAGAAAAATATAGAtttatatgaatttttttttatccatgTAATGTATTTTTACGACATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35454	H(+)/Cl(-) exchange transporter 6 OS=Mus musculus OX=10090 GN=Clcn6 PE=1 SV=1
P51797	H(+)/Cl(-) exchange transporter 6 OS=Homo sapiens OX=9606 GN=CLCN6 PE=1 SV=2
Q9TT16	H(+)/Cl(-) exchange transporter 6 OS=Oryctolagus cuniculus OX=9986 GN=CLCN6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001932 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00654 all species →	Voltage_CLC	Voltage gated chloride channel	Family	Interproscan
PF00571 all species →	CBS	CBS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046342 all species →	Homologous_superfamily	CBS domain superfamily	Interproscan
IPR001807 all species →	Family	Chloride channel, voltage gated	Interproscan
IPR000644 all species →	Domain	CBS domain	Interproscan
IPR051280 all species →	Family	Voltage-gated chloride channel/antiporter	Interproscan
IPR002248 all species →	Family	Chloride channel ClC-6	Interproscan
IPR014743 all species →	Homologous_superfamily	Chloride channel, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11689 all species →	CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005247 all species →	Molecular Function	voltage-gated chloride channel activity	Interproscan
GO:0006821 all species →	Biological Process	chloride transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0015108 all species →	Molecular Function	chloride transmembrane transporter activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05015	CLCN6; chloride channel 6	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.