Gene detail

Detailed information of FUN_034772-T1 in Siderastrea siderea

Genomic Location: contig_38:3607827...3639212
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_034772-T1

ATGTCACACAGTTATTATGGCAAGCAGTGGGTGGAGTCCCAGGGAGCCATTCTGGACTTATTGGAGGTTGAACTTCCACCAGAACCTGCCAAACCAGAAAAGGACCGCATTGCTGCTTTTCAGATGTTTGCTGTCATGTACATTAAATACATACAAATATTTAGAAGGATTGAGGAATGCTATGATCAGGTGGTACATCCACAGAAACGAAGAGTCCTGCGGCATTTGCTTGATGGTATCCTGGGGAGAATTTTAGAACTAAAGAATGAGATGGTTCTACTGGAGTACTCAGAATACCATTATTTTGATGATGTACTTTCAGATCTCAAACTTACGCCAGATGACATTGAAATTCCAATCCCAAAGTACTTTACCTATGAGAATTCTAAAGTTCTGCAGGAAAGAGAAAAGATGCTTGGTGGAATCCTGGCAAAAATGGGACCTCAAGAAACTACACCTcaaaaagaagaaattcAGATGACCCTTGATGATGCCATCAGGCTAATCCAGgTACATGAGAGAGCAAGACAGGGAAGACTTAGGGCAAAATTCATGAGAGAAATCAGGcaacaagaagaaagggaaCGCCAAGCTCAGATGCGTGGAGCACCAACAATGGATCCTGACATCGCAGCGACTAAAATACAAAAGGTGTGGAAAGGCTATTCACagagaagaaaaacaaagaaaatgagagAAGAAGAGCTGATATTTGTTGGAATGGCTTCCCCACCAGAACCCCAGGACTGGAAAGACACACCCATGTATTCAGCTAACAAGACAGAGgaGCACAGAAGAGTTGTACAGGAAGAACATGAAAGGGAATATCAACAGGCACTGGTGTCCATTAAAGAGAAGATTCGTGAAATCGAGGGACCTGACGTGAAAGAAAACATGCAGGACCAGATCAGACAGTGGTTTATTGAGTGCAGGGACAAGACAGGAAAGTTCCCTGATTACCCGGATGATGATGAAGGAGGATCTGCCGCTATTTTCAAGGAAAAAGATCCGGCAGAGatgGAGAAAGAAGAAGGACAAGAGGACAAAGATGgagggaagaagaaaaaaggaaagaagggCAAGAAggacaagaaagagaaaaaagacaaaaaggataaaaagggAAAAGGCAAAGGAAAGGGCAAAGGGAAAGGCGGAGATGAGGAGGAGGAAGAAGGAATAAAGATGCAAGTGTCCAACTTTGTACCAACCGTCAATGAAGCAGCGGCTACTTACAAAGatGTGTGGCAATTCAGAGACGAGACTGGCAATTTTGAGCAGAAGCACGATGCAGAACTGATAAAGGAAGCCAAAAGAATTGAAGTtgaagaagaaattagaaagcAAGTCGACGAGCTTATGCGACAGGAGCTGAAAAACCTTAAAATGgctgttgATAGAGAGAAAGGTGGAAAGAAAggtaaaaaaggaaagaaaagtggCAAGAAAAGCGGGAAAAAGaaaaagaagaagagtgGAAAGAAAAGCGGAAAgaagggaaagaaaaagaagaaggaaaaggaTTTGACAGCTGACAGAACTATGGAGTCGCTGTATGAGGAGTTGGTCCATGAGGGAATATTGGTCCGAGCTCCGAAGACTAAACTAAAGGAATACTGTGGAGAGTACAGTTACCTTGGCACCACTCTTCGTCAGGCCAACATTGAGCCTATGCCATCCATATCTGACGTTAGAAGAGTCATCACGGAGTTCGCTATACTGCCATTAGGTTCCCAAGCCGTACATGAAAAATCGCCACTTGTCAAATCTGTTCTGATCGCGGGCCCGCGTGgtgttggaaagaaaatgctgGTGCACTGCATATGCACGGAGACTGGGGCGAATATGTTCGACTTGACCGCTGCCAACATCGCGGGCAAATATCCCGGGAAGGCTGGGCTCCAGATGATGTTGCACATGGTCTTTAAGGTTGCACGTCAGCTTCAGCCATCAGTAGTTTACATTGGAGATGCAGAGAGGACGTTTGTTAAAAAGGTTCCAAAGACAGACAAGACCGACCCCAAGAGACTAAAGAAGGACCTGCCGAAGATTTTGAAAACCCTTAAACCTGAAGATCGAGTGCTTATCGTGGGAACCTCACGAATGCCTTTTGATGGTGAGATCAAACCATTTTGTGGCTTGTACCAGAAAATTCTTCTTCTTCCTAGACCTGACTATGCGTCGAGGTTCTTGTTATGGAAGGCGCTGATCGCCAGGTATGGTGGGCACGCTACTGAGTCAATAGACGTGAGTTCGCTAGCCAAAATAACTGACGGCTACACTCCGGGCCACATGGCTCAAGCCATTCAGCAGATTCTCACAGAGAGAAGAATACAGCAGCTATCGAAGAAACCCTTAGCCGCGGTTGAGTTTGTAGCGCCATTGGCTCGCATTGATCCaatttataaagaagaagaggaagcaTTCAAGACCTGGTATGCGAAGACACCTTTGGGAAAAAAGCGCGCGAAAGCAGCGGCGGGAGAAGACGAGGGTGACAAGaagggaaagaaaggaaagaaaggaggaaagaaaaagaagaaataa

Transcript

FUN_034772-T1

TTTTCAGCGGCATTTTTGTCAGGAGTCATGCGCAAGTTGTTGACAatcgttgctatggtgatttgCACGGTAAAAATATGGCGATCGAGTTCAGGAAGCAACTGACAACTAGGTTTTCAGTTTGTTTCTGATTTCTGCAAATGGAGGTGTTCATTTAAAATCATTTTCATCATGTCACACAGTTATTATGGCAAGCAGTGGGTGGAGTCCCAGGGAGCCATTCTGGACTTATTGGAGGTTGAACTTCCACCAGAACCTGCCAAACCAGAAAAGGACCGCATTGCTGCTTTTCAGATGTTTGCTGTCATGTACATTAAATACATACAAATATTTAGAAGGATTGAGGAATGCTATGATCAGGTGGTACATCCACAGAAACGAAGAGTCCTGCGGCATTTGCTTGATGGTATCCTGGGGAGAATTTTAGAACTAAAGAATGAGATGGTTCTACTGGAGTACTCAGAATACCATTATTTTGATGATGTACTTTCAGATCTCAAACTTACGCCAGATGACATTGAAATTCCAATCCCAAAGTACTTTACCTATGAGAATTCTAAAGTTCTGCAGGAAAGAGAAAAGATGCTTGGTGGAATCCTGGCAAAAATGGGACCTCAAGAAACTACACCTcaaaaagaagaaattcAGATGACCCTTGATGATGCCATCAGGCTAATCCAGgTACATGAGAGAGCAAGACAGGGAAGACTTAGGGCAAAATTCATGAGAGAAATCAGGcaacaagaagaaagggaaCGCCAAGCTCAGATGCGTGGAGCACCAACAATGGATCCTGACATCGCAGCGACTAAAATACAAAAGGTGTGGAAAGGCTATTCACagagaagaaaaacaaagaaaatgagagAAGAAGAGCTGATATTTGTTGGAATGGCTTCCCCACCAGAACCCCAGGACTGGAAAGACACACCCATGTATTCAGCTAACAAGACAGAGgaGCACAGAAGAGTTGTACAGGAAGAACATGAAAGGGAATATCAACAGGCACTGGTGTCCATTAAAGAGAAGATTCGTGAAATCGAGGGACCTGACGTGAAAGAAAACATGCAGGACCAGATCAGACAGTGGTTTATTGAGTGCAGGGACAAGACAGGAAAGTTCCCTGATTACCCGGATGATGATGAAGGAGGATCTGCCGCTATTTTCAAGGAAAAAGATCCGGCAGAGatgGAGAAAGAAGAAGGACAAGAGGACAAAGATGgagggaagaagaaaaaaggaaagaagggCAAGAAggacaagaaagagaaaaaagacaaaaaggataaaaagggAAAAGGCAAAGGAAAGGGCAAAGGGAAAGGCGGAGATGAGGAGGAGGAAGAAGGAATAAAGATGCAAGTGTCCAACTTTGTACCAACCGTCAATGAAGCAGCGGCTACTTACAAAGatGTGTGGCAATTCAGAGACGAGACTGGCAATTTTGAGCAGAAGCACGATGCAGAACTGATAAAGGAAGCCAAAAGAATTGAAGTtgaagaagaaattagaaagcAAGTCGACGAGCTTATGCGACAGGAGCTGAAAAACCTTAAAATGgctgttgATAGAGAGAAAGGTGGAAAGAAAggtaaaaaaggaaagaaaagtggCAAGAAAAGCGGGAAAAAGaaaaagaagaagagtgGAAAGAAAAGCGGAAAgaagggaaagaaaaagaagaaggaaaaggaTTTGACAGCTGACAGAACTATGGAGTCGCTGTATGAGGAGTTGGTCCATGAGGGAATATTGGTCCGAGCTCCGAAGACTAAACTAAAGGAATACTGTGGAGAGTACAGTTACCTTGGCACCACTCTTCGTCAGGCCAACATTGAGCCTATGCCATCCATATCTGACGTTAGAAGAGTCATCACGGAGTTCGCTATACTGCCATTAGGTTCCCAAGCCGTACATGAAAAATCGCCACTTGTCAAATCTGTTCTGATCGCGGGCCCGCGTGgtgttggaaagaaaatgctgGTGCACTGCATATGCACGGAGACTGGGGCGAATATGTTCGACTTGACCGCTGCCAACATCGCGGGCAAATATCCCGGGAAGGCTGGGCTCCAGATGATGTTGCACATGGTCTTTAAGGTTGCACGTCAGCTTCAGCCATCAGTAGTTTACATTGGAGATGCAGAGAGGACGTTTGTTAAAAAGGTTCCAAAGACAGACAAGACCGACCCCAAGAGACTAAAGAAGGACCTGCCGAAGATTTTGAAAACCCTTAAACCTGAAGATCGAGTGCTTATCGTGGGAACCTCACGAATGCCTTTTGATGGTGAGATCAAACCATTTTGTGGCTTGTACCAGAAAATTCTTCTTCTTCCTAGACCTGACTATGCGTCGAGGTTCTTGTTATGGAAGGCGCTGATCGCCAGGTATGGTGGGCACGCTACTGAGTCAATAGACGTGAGTTCGCTAGCCAAAATAACTGACGGCTACACTCCGGGCCACATGGCTCAAGCCATTCAGCAGATTCTCACAGAGAGAAGAATACAGCAGCTATCGAAGAAACCCTTAGCCGCGGTTGAGTTTGTAGCGCCATTGGCTCGCATTGATCCaatttataaagaagaagaggaagcaTTCAAGACCTGGTATGCGAAGACACCTTTGGGAAAAAAGCGCGCGAAAGCAGCGGCGGGAGAAGACGAGGGTGACAAGaagggaaagaaaggaaagaaaggaggaaagaaaaagaagaaataaaaacaaataatacaGACAAACCAACTGAAAGGGAGAGAGAATGACTAGAGAGACCTTTGTGTGTAGCGAATTTGTATGCAATGCTGTAAATAGGTTTAAGTGTACTTCAAATACACTCTGTAAATAAAATATGTAAAGGAATAAAGTGTCCTTCTTTGCACTTTGTAGACTATATTTGTTCTTGTCACTGTTAAGTAATCACTGCACAAGATTTCATCTCGAGCTATAAATAATTAAGTTTCGTGACGTTCAGCCTCGTGAAGAATTAATGACCAATAAATGCCCACTTCTAGCtaagatttttttcataaaattttactGTCCGAATCTGAAAACCTGGTGCACTTAAATTACAGAGAATGTAGAAGACGAATTATTTGCGAAAAGATGACCAatactcctttttcctctctgttgtACTCGGGTACTTTTTTTGTTCCCTGTCGTGGTTGTTTGGGTTTCCTcttcgttttgcgagggctcaagtggcgacctcgtgaaacgtcggctgttttctcaggccgGTTTCCTCTCTGTTGTACGTTTTTGCTCTATAAcgtatttttttctctttgttgtcCTTTTCGTTTCCCTATCGTACTGTTTTGCTCGCATTCCTACTCTTTTTCCTGTCGATTCAGCGAAATAAACAGATGGTTTCAATTGCGGGGGCTGTCAATGTGTTTGATTCGAATTTTTGTTGAACGCAAAGCAAATAGCGTTTGGCTCCATGTATTTCAGACTGCCGGGGATTTATTTTCAAGCAACTGTTCCTGGCATTTAACGGAAAACTTTCCATGTTGGTCGGTATTCTATTAGAAACTGAAAGTCTTTGCGGGTGTCTTTCAAAGAGGCCACAGATTGCAGACAGCTTGATAAATTGGGGTAAAGTTAGAAACAGAAAGGTCAGCTTCAGTTCGATTCTCGTTTTGTTGGCCTGGTATCTACTTCGAAAAGAGGATTCAGCCAAAAAAAAGGCTTCAATGCCAATGCAGTGAGCCTCCAAAACTACGAACTACTGGACATTAATTGAATTCAGTTCCTGGTAGCCAGGCACAGCCTCTGTCACTTAACTGATTTCCAGCCCCACCCTCATTCCAACCCTCACTCTCCCGGCCAGCCGACCCAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052267 all species →	Family	Nexin-Dynein Regulatory Complex Component	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14690 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24837	IQCA, DRC11; dynein regulatory complex subunit 11	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.