Detailed information of FUN_034804-T1 in Acropora pulchra

Genomic Location: ptg000025l:315671...317963
NR annotation: XP_015774801.1, PREDICTED: alanine--tRNA ligase, cytoplasmic-like [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O01541Alanine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=aars-2 PE=2 SV=1
Q54Y20Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=alaS PE=2 SV=1
Q5A8K2Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=ALA1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002669 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01411
all species →		tRNA-synt_2ctRNA synthetases class II (A)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050058
all species →		FamilyAlanine--tRNA ligaseInterproscan
IPR018164
all species →		DomainAlanyl-tRNA synthetase, class IIc, N-terminalInterproscan
IPR002318
all species →		FamilyAlanine-tRNA ligase, class IIcInterproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR018165
all species →		DomainAlanyl-tRNA synthetase, class IIc, core domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11777
all species →		ALANYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0002161
all species →		Molecular Functionaminoacyl-tRNA editing activityInterproscan
GO:0004813
all species →		Molecular Functionalanine-tRNA ligase activityInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0006419
all species →		Biological Processalanyl-tRNA aminoacylationInterproscan
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_034804-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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