Gene detail

Detailed information of FUN_034807-T1 in Siderastrea siderea

Genomic Location: contig_38:4121069...4151977
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_034807-T1

ATGGAGATCAGGAGTAGTGCCTCCTACATGTGGAACATAAAAGATGTGCTGGGACAAGGAGCAACGGGAGCAGTTTACAAGGGAAGACATAAGAAAACTGGCGATAGTTACGCGATCAAAGTTTCGAACAACTTGGGCATGATGCGGCCCACTGAGGTTCGAAGGAGAGAGTTTGAAGTCCTCACGAAACTAAATCACGATAACATCGTCAAGATACATGCCACTGAAACTGAGCTGAGAACACAGAATGAAATCATTGTTATGGAACTGTGTTCTGGCGGAAGCCTGTTTATGATGCTTGAGAATCCCAGTAATGCTTATGGCTTCCAAGAGGAAGAATTTAAGCAAGTGGTTAAAGATGTTGTTGCAGGCATGAAGCACTTAAGAGAGCAAGGAATTGTACACAGAGACCTCAAGCCTGGAAACATCATGAGGGTGGCAAAAGATGATGGCAGCTTTGTGTACAAATTAACTGATTTTGGTGCTGCAAGAGAGTTGGAAGGTTCTGAAGAGTTTATGTCGATTTATGGAACAGAAGAGTATCTGCATCCAGATCTTTATGAAAGGGGTGTGTTGAGGAAACATGGTAACAAAGCATTCAGTGCAACGGTTGACTTGTGGAGCATTGGTGTTACATTCTACCACATCGCCACAGGACAGTTACCCTTCAGACCATACGGTGGACGACAGAACAGGGACACCATGCACCTGATTACATCCAAGAAGAGGCCAGGCATAATCTCCGGAGTCCAAAAGAGCGAAGGAGACAATATAGAGTGGAGCGATAAACTTCCAGAGCACTCACGTCTCTCACAGGGCCTCAAAGATCTTTTGACCCCAGTGCTGGCTGGCATTCTGGAATCTGAGCCGTCCTCAACTTCAATGTCATTTGAACAATTCTTTGCCAGCGTCCAGGACATTGTATCAAGAAAGGTCGTTGATGTGTATTCAGTGCACTCTGCATCGTTTCACAAAATCTACATTAAACAAGATGAAACCTTTGCCAAATTTCAGGAGCTCATTGCAGTGCAGACAGGAGTGAGCGCAGCCCAACAGAAACTGATGTTTAAGTACGAAGAGTTCAGGCCGGACCCTATGGCGCCTGCTTCGTCGTACCCGGACACTTCGGATGACTGCTACATGGTGATGATCGGAGGAGATAACATGTCGCCTGACAGACTGTACCTGCACAAAATACAAAATGTTCCCCTTTTGCCACCGGATTATACTTTGGAAACAGATGCTGCTGTTGCGAAGATAATGGCCAATCGTGCATATTGCTGCAAACATGCCGTGCTGCAGTACTCTAGAGCGACAAAAGCCATGCTGGTCACAATTGAAAGTATCTTGAAAAACCTCAAGAAAGTCATGATGTTGTATGTTTCTTTTTGCAAGCAAATTGAATCACAGTGGACATCACTCAAACAGACGTCAGAGGTTTGCTATGCCAGTCAAAATCACTTGTTGTGGGTTTTTGAAACTCTTCTATCAAAGGTTGCTGGACCACAAGATGAagtagaagccattcgagaagaGGCTCAAACGATAGCAAAATGGACAGAAACGAAAAGACACAGCGAAACGGAGTTGCACAAAACAAATCAGGGGCTTGATCAGTTCAAGAATCTGATTTCTGACATTGTGGAGACAGACAGATTTCGTGCTTTCTTGGAACAGTTTAGGAAGGACACTGTGAATCAAAAATTTTTCAATGTGGTTTCAACGTACACAACAAACATCGAAGAGATTTACCAACTTTTCAGGAAAGACAAACACCACAGGAGATTGTCTTACGCTGACGAGCAGAGGCACATGTTTGACAGAAAAAAAGTGGTGGTCCTGTGTGATAAGGTTACCAAGGTAACTGAGGAAGCTTTGGGGAAAAGAAGCGAACTACATGGACATCTTATTCAGTGGCTTAGTGAAGTGAATCGTTGTTACGAAGAAGCTGAAAACTTTCACGCTTCTTTTATGGGTCAAACTCAAGCAACTGAAGCTCATCTTCTTGCTTTACAAACGtttcaagagcaatgcaaaacaaaatctaaGAACATTGTACAGAAGATCCAGAAACTGATGAGTACACCAAGTTGTGCTTCGACAAGGACGGAGGCtcctgctgctgctgctgtaaATGAAAATGCTGAGATAACGGACGGGATCATGCAAGCACTTGGAAATGAGCTTCACACACTGTCAAACATCTCAAAGGCATCGCTAGGAACAGCTCGTGACAACACGCAACAGATTGAAAGTCTCATTGGCAGCTTTATAAAGCTTTATACGTCTATCAATGACCACTTGGAGAAAAAAGCGAAAGAACTACATGAAACAATAACAGAGGACTCACACTACTGA

Transcript

FUN_034807-T1

GCTTTCCTGGGTGTAGCGACAGAAACTGCTGCCAAATATGTCCCCATTTTCAAAATTGTCTACACTAGATGCAACATCGCGCTGAAATAATAAGCTGGCAGAAACGGGGATCGAACATATATAACCTTTACGAACATATATAACCTTTACATTGTACATGGATGACACAAATGGAAAACGCACGTCTTAATTAATGTACAAAGCCGTCGCTTTCTTCAGTTGCAGTTTTCCGAGAAACTGTGACCCTTTCAAGGCTGAGTCTTTCTTGGAAAAGTAGACGATCAAATTAACATGGAGATCAGGAGTAGTGCCTCCTACATGTGGAACATAAAAGATGTGCTGGGACAAGGAGCAACGGGAGCAGTTTACAAGGGAAGACATAAGAAAACTGGCGATAGTTACGCGATCAAAGTTTCGAACAACTTGGGCATGATGCGGCCCACTGAGGTTCGAAGGAGAGAGTTTGAAGTCCTCACGAAACTAAATCACGATAACATCGTCAAGATACATGCCACTGAAACTGAGCTGAGAACACAGAATGAAATCATTGTTATGGAACTGTGTTCTGGCGGAAGCCTGTTTATGATGCTTGAGAATCCCAGTAATGCTTATGGCTTCCAAGAGGAAGAATTTAAGCAAGTGGTTAAAGATGTTGTTGCAGGCATGAAGCACTTAAGAGAGCAAGGAATTGTACACAGAGACCTCAAGCCTGGAAACATCATGAGGGTGGCAAAAGATGATGGCAGCTTTGTGTACAAATTAACTGATTTTGGTGCTGCAAGAGAGTTGGAAGGTTCTGAAGAGTTTATGTCGATTTATGGAACAGAAGAGTATCTGCATCCAGATCTTTATGAAAGGGGTGTGTTGAGGAAACATGGTAACAAAGCATTCAGTGCAACGGTTGACTTGTGGAGCATTGGTGTTACATTCTACCACATCGCCACAGGACAGTTACCCTTCAGACCATACGGTGGACGACAGAACAGGGACACCATGCACCTGATTACATCCAAGAAGAGGCCAGGCATAATCTCCGGAGTCCAAAAGAGCGAAGGAGACAATATAGAGTGGAGCGATAAACTTCCAGAGCACTCACGTCTCTCACAGGGCCTCAAAGATCTTTTGACCCCAGTGCTGGCTGGCATTCTGGAATCTGAGCCGTCCTCAACTTCAATGTCATTTGAACAATTCTTTGCCAGCGTCCAGGACATTGTATCAAGAAAGGTCGTTGATGTGTATTCAGTGCACTCTGCATCGTTTCACAAAATCTACATTAAACAAGATGAAACCTTTGCCAAATTTCAGGAGCTCATTGCAGTGCAGACAGGAGTGAGCGCAGCCCAACAGAAACTGATGTTTAAGTACGAAGAGTTCAGGCCGGACCCTATGGCGCCTGCTTCGTCGTACCCGGACACTTCGGATGACTGCTACATGGTGATGATCGGAGGAGATAACATGTCGCCTGACAGACTGTACCTGCACAAAATACAAAATGTTCCCCTTTTGCCACCGGATTATACTTTGGAAACAGATGCTGCTGTTGCGAAGATAATGGCCAATCGTGCATATTGCTGCAAACATGCCGTGCTGCAGTACTCTAGAGCGACAAAAGCCATGCTGGTCACAATTGAAAGTATCTTGAAAAACCTCAAGAAAGTCATGATGTTGTATGTTTCTTTTTGCAAGCAAATTGAATCACAGTGGACATCACTCAAACAGACGTCAGAGGTTTGCTATGCCAGTCAAAATCACTTGTTGTGGGTTTTTGAAACTCTTCTATCAAAGGTTGCTGGACCACAAGATGAagtagaagccattcgagaagaGGCTCAAACGATAGCAAAATGGACAGAAACGAAAAGACACAGCGAAACGGAGTTGCACAAAACAAATCAGGGGCTTGATCAGTTCAAGAATCTGATTTCTGACATTGTGGAGACAGACAGATTTCGTGCTTTCTTGGAACAGTTTAGGAAGGACACTGTGAATCAAAAATTTTTCAATGTGGTTTCAACGTACACAACAAACATCGAAGAGATTTACCAACTTTTCAGGAAAGACAAACACCACAGGAGATTGTCTTACGCTGACGAGCAGAGGCACATGTTTGACAGAAAAAAAGTGGTGGTCCTGTGTGATAAGGTTACCAAGGTAACTGAGGAAGCTTTGGGGAAAAGAAGCGAACTACATGGACATCTTATTCAGTGGCTTAGTGAAGTGAATCGTTGTTACGAAGAAGCTGAAAACTTTCACGCTTCTTTTATGGGTCAAACTCAAGCAACTGAAGCTCATCTTCTTGCTTTACAAACGtttcaagagcaatgcaaaacaaaatctaaGAACATTGTACAGAAGATCCAGAAACTGATGAGTACACCAAGTTGTGCTTCGACAAGGACGGAGGCtcctgctgctgctgctgtaaATGAAAATGCTGAGATAACGGACGGGATCATGCAAGCACTTGGAAATGAGCTTCACACACTGTCAAACATCTCAAAGGCATCGCTAGGAACAGCTCGTGACAACACGCAACAGATTGAAAGTCTCATTGGCAGCTTTATAAAGCTTTATACGTCTATCAATGACCACTTGGAGAAAAAAGCGAAAGAACTACATGAAACAATAACAGAGGACTCACACTACTGACGGCAGTGGAAAAATAATGGTCTGACACACCCATGCTGGCACCAGGGTGGTAACAATATTGATTAACATGGTTCCAGTTCTAGCAGCATTGTTACACAAATCATGTTTGTGCCATATGTCGTGTCGTGTTAGACCTAACAGTGCAAACCCAGTCCAGCCACAGGCCTACCATATTGTTCAACATCACAGGCTGCCTAGCCTGTGAGGTGACCCTACTCGTTACCTGGGTCTGTGAACAGTATGGAAAATGAAGAGCATTACGGGATAGCACCCGCTCTGATTAAGGGCCTGGTATTGAGACTGGATCCCACGTCTAGGAAAGTGACCTGGCTTCCTGTGTTTTTGAAAtttggttttaATTTTTGTGCGTTTGCTCTAGTGTTGTGTTTTCGGGCCCAAAACTTGGTTCAACAAACCCTGTTTCACATGTaacaaacaaaagtaaaaatgtGACCATATAAATCTAAATATAACTCTGTGTGCGCTCATTTTCTGCCCTGAGCAGTTGTGATTTAGGTATCAATTTACTGAATGTAGAACTGCTAGTACAAATTATACCTATTTGAATAAGAGTATAAAGGCGCAACTAACAATTTACCTAGCCTGTGTATAAGGGTTAAGATTAATTAGCATTGTATGCAATTTAAAAACGCACAGCAAAACAGTTTCGTCTGAAGTTGACGTGTTTGATTTAGGAAATTGTAATAATTCAAGTTAtaacagaaaattttgcccGTTCTTCTAGCTTATGAAAGTTCATTGTACAAAATATGTACATCCTGGTATTGAGACTGGATCCCACGTCTAGGAAAGTGACCTGGCTTCCTGTGTTTTTGAAAtttggttttaatttttgttttcacgtTTACATTTTTGTGCGTTTGCTCTAGTGTTGTGTTTTCGGGCCCAAAACTTGGTTCAACAAACCCTGTTTCACATGTaacaaacaaaagtaaaaatgtGACCATATAAATCTAAATATAACTCTGTGTGCGCTCATTTTCTGCCCTGAGCAGTTGTGATTTAGGTATCAATTTACTGAATGTAGAACTGCTAGTACAAATTACACCTATTTGAATAAGAGTATAAAGACGCAACTAACAATTTACCTAGCCTGTGTATAAGTCTTTAAGATTAATCAGCATTGTATGCAATTTAAAAACGCACAGCAAAACAGTTTCGTCTGAAGTTGACGTGTTTGATTTAGGAAATTGTAATAATTCAAGTTATAACAGTACATTTTGCCCGTTCTTCTAGCTTATGAAAGTTCATTGTACAAAATATGTATATCCTAGCATAAGTATTCGTTAATTACACTAATAAGTAATTGTAGCTTAATCAGTTGATATGTGAACTTCACCCTACAAATTGCTTGTTATCTGAATATTGGCTGGCCGTCAGCCTATAGTTGTCTACGTTTATCTAAGCCACTGTTGGCTTTCCGTGAGCCATTGTTTCATTACGTTAAGCAGCAATTTACGTATGGGTTCAGCTACTTTGAAACTATCAGCATTAAGTTCCACACCTTTGTGAGTCTTTTTTTCCGTTTAAATATAGACTTGAAGGTGCATTTGCCCTGATTGGCTAATAACCGTGTTTTATCAAAGTATAAAGCATAGAAAAGCCTATTTTGTGGTTTTCTGGGTGTGTTCCACGAGACGAAGTCGTTAATGATAACGTttgattgaaagaaaaaagacattAGTGACAAATAAATAATTCTTTGCATAAGTTTTCAGTAGAATATTTAAGAATGTAGACATGTGATTAAGGGgtcaaaaacaaagaaagaagcgAAAACATTGAGTAAAGAAATAATAAACCGTCTTATTGCTTTCTGGGTGCCTTCCGcgagataaaaataaaatgaaacttTTGCTAAAAAAATTGTGACGAGGCATGCTTTGTGTGATATTTCAGTAGAATACGTGTGGTTATTGGAttggaaaaaagagaaaaagaggaCATTGAataaatttcaatatttttttggtAATAACGGTGTTCTTATGTATCTCGTGGGAAAAAAAACTAGACACAAGGTTATTTTTTAGTATAGCTGTATTCCAATATACGTATAAATATAAAAGTGGTAGGAATACTTCTTTAGATTTAAGATTTTGATTAATTTGCTTGTCTGTTGCGTTCCGTTTAAACATTAAATAATCTTCGGCTGCATACCATGTTAAATATTATTGTAATAAGCAATATAGTTTTCATGTTTAATAGAACTTTGGAAACCTGATTGTAAGCAAGACGGTAGGCAACACTCAACTATCACAATTTAGGCAGTTGAGCATTTCATCCTTGTTTTACGCATGTAGATAGCCTACTGTCAATAATTGTAAAAATCAACAAAggaaataaagatttcattgtGTTCG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF18394 all species →	TBK1_CCD1	TANK-binding kinase 1 coiled-coil domain 1	Coiled-coil	Interproscan
PF18396 all species →	TBK1_ULD	TANK binding kinase 1 ubiquitin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR041309 all species →	Domain	TANK-binding kinase 1, coiled-coil domain 1	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR041087 all species →	Domain	TANK binding kinase 1, ubiquitin-like domain	Interproscan
IPR051180 all species →	Family	Inhibitor of nuclear factor kappa-B kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22969 all species →	IKB KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05410	TBK1; TANK-binding kinase 1	EC:2.7.11.10	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.