Gene detail

Detailed information of FUN_034823-T1 in Acropora pulchra

Genomic Location: ptg000025l:469978...499821
NR annotation: XP_044173494.1, uncharacterized protein LOC114977220 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_034823-T1

ATGAAATATCGCAATACTGTTAAATATCCTGTAAACAATGTGCCTGTGAATGCTTTCTCCTCAGATTCTCCAAGCCAAGTTCAGGAAGAACTAGGAGATTTAAGTCAGTCCCCTTTGGAAATTGCCGATTTCAAGTTAGACATCGACCACTTTGCACAGTCCTATGATAAAAACACAAGACATTGGCTGTTTGCTGATTTTGATCAGTGGTTCAACGATCCAGGAGACTCCAGAGCTTATGTACTGCTGGGTGACGCAGGAGTTGGCAAAACTATCATAGCAGCAGCCTTGGCAAAACGCGCGCTAGAGCGTAAAAGCTTTGGTGCTTGTTATTTTTGCCTTCATAAGGATACTTTACGAAGTGACCCTAGGAATCTTATCGGCACTGTAGCTTATCAACTGTGTGAGTACAATGAGGAGTACGGGACTAACGTGGGAGGGCGCAGTAGAGTGACAACTATTTTGGCCAATTCAGCATTAGGGTTGATTGAGCTGTTTACCAAATTGTTGCAAGAGCCACTAGGAAAATGTAACACGCATTCCAAAAGAATGTTAGTCATTATCGACGCTTTAGATGAGACAAATCACGAGTCCAGGAAGGATTTCTTTTATGTTTTGAGGGATCGCTTTCCCTTGCTTCCAAAATGGCTTGTGTTTTTTATTACCAGTCGCCCTGAGGAAACTGTGAAATTCAATTTGAAAAGGTACAATCCATGTATAAAGATATGTGCAGGGAATGATCAAGATGACGATTACTATCGACAACACGAGGAGGACATGAGACAATTTTTGATGAAGCAAGTGAATTTTTCCGAGCTCCCTTACACCGTTGAAGAAGTGGTAGCAAAATGCCATGGAATGTTCTTATATGCGCGCTACATTTCTCAAGAACTGAATGATCCAACGTCATCCATTAAAGGAGCTAATCTCGATGACCTTTTTCCAGGAGATATTGAGGGTTATTTCCTGAACAATTTCAATCGGATTTGTGACAAATTGGGTGAAGATCTCTATGGGAAATTGTTTGGTTGTGTTATAGCAGCTCCTGCCCCTTTTCCTTTTCCGTTTATTTCGTGTATTCTGGAAAAGGAGAATTCCAACCTTAACAAGAAAACCGTAATCGATGCTGTTTCACGATTTGTGGTTGTTCGCAAGTCTGATAGTACGTTTTGGTTTTTGCACAATCTGATTCCTTTGTGGTTAACCAACGAAGAGAAAGCCCAAGAACTGTTTATCGATGAGCGTAAGGCAAGTGAGTACTTCAAGGAAATCATTCTTACTTTTCTCCCGCGCGCCTTTAGTGATCAACTAGAGGGAGGCGTCTCAATAAACCGTGATGTACGTAACTATTTGTTGCGTCTGGGCGTTCGTTTCCTCTGCAACTACGACAACGAGGATACCATGAAAACAGTTTTCAGCTGCTTGACCAGCTTTCATTTTCTTCAGAAGAGAGTTAACATTGATCGACTTGAGATTTTTGCTGTCGTTAGTGATTACAAGTGTTGTTTGCAATGTCAGTATCTTGCTGACCAAGAAAAATTGATGCTTGAAGAGATTTACAGAGCTCTAGAAAAGACTAGCTATGTTCTTGCGGATTGCCCTCATGTTCTACCTTCATGTCTGCGATTGACTTCCGAAAGGACTCAGAGGAAACTTGCAGTTTCTGGCGATACCTTGATGATGTGTAAAAGCTTGTATTGCCTTCCATATCCTGCGTCGATTTTGTCGTGTGAGGACGGCGTTTTTGCTTTATCGCCTAACAAAAAGCTGCTAGCTGCAGGTAATCGAGTGACCGAAATTGTCCGTATGTATGATGCATGTTCGCTAAAAGAGGTGCTTGGCCCTGTTGATTGTCAAATGAAAATTGATTACCTAGCTTTCTCCCCTGATGGGAAATTTCTGTTATTTGGAAAGGATGGTGTGGGTTTATCTGTGGAGCGAGGAGGTGTGGAAGAAATTTTTACGTCATACGAGGAGAAACGAGTTTTGGATCAAGGCAGACACCATGGTTGGTGTTTAGCATACGCCTTTCTTTTGTGGGCTAAGTTGGAGTTCTTTGAGGGACAAGGCCATCACATGGAAATGATTTGTTGTCTTTTCACGGTTGCCAAAGTCTGTTCCCCCGTGAAAGATTTGGATACAATTTTCGATGTAGATGATCATGGTTCTTTCTATTTGCGCCGAGACAAAATGATTGATTTTCGGCGTAAAAACCTGTGGCTAATTAAGTGCTATATGGAGATCGATTGTGAATATTGTCGTAGGTATTATGAACAAGAACCAAGCCTAACTGCTCTTATTCAGCGGATAGCTGGAATGCACCCATTTGATTATTTTCATGATTTTGAGGTCCTACTTTTAGGCCCGTTCAATTCTGAATTTTTGACGTTGTGTGTTACTATTCTGAGGTCAATGAAAGCTCAGGAATTCCCCTCCTCCCTACCACTAAAGCTGCGTGACTGTGTTATTCTATCTCCAAATGGAAAACTGATCGCAGTTAGAGATCCACGCTCTCCAGGAGGTGGGGGACATACAATTAAAGTGTTTATGAACTTAACGGAAACTGGTGAAACTGTGTCGTTTCCAGATCCTGTTCATGTTATCAAAGACGTTGAAGCGTCTGCTTTCACTCGCAACAGAGATTTTGTTGTTTACGTCCAAAAAGAAGGTCGATGTTTCCAGGCTCTCGCTCTTCAGACTGACTCGATTCTGTCATGTGACTCAGGATTCAGCCCAGTGTCAGTTGACATCATACAGTCTCCGCAAGTTGGGTTTGTTTTTCGTGCGGGAAGTGAGGAAACTATCGTCTCTCTTAGTGATTTTCTTGTATCGTCGGCGCTCAGGAAGTACTTGGTATTGCCGGGGGTCACTTTCACTGGGTCGCCATCTGGAATAACGTTCACTCAAGGAGGAAACATTTCTTGCTTTATTTCCCCCAATTTGACGCTGTGTGTTGTGATAAGAAACGGTGATGGATCATTTGTTACTTCGGCGAAGTGGGCTCCGCTGAAATATCCAGATGGTTGTAAGGTCGAAAATTGTGCTTTGTCAAGAAAAGGAAAGTCAATTGCCATTTCCCAAAAAGCCAGCATATTTCTATTTGATAATCACGCGTTTGACTGTACCGTATTTAAAGAATCAGAGTATATCGGGTGCCAGGTGTCTTGTCTGATGTTTTCACATGACGGCACACTTCTTCTTTATTGCGTTGAACGGCGAAATAGTAAAGCGGAAGTGTGTCTCTGGAATGTTGACCAGGACAAGGTCTCTTCTTGTTTCTTTGCTTCAACACTTGTGTCCATAAACTGTTGTTGCTTTTCGCCCGACAACTCCATGATTATACTTTGCGGTGATTTCCGAGTCGAACTTTGGGAAGATGTTCTGTGTTCCCGTCCACGCTTAAAAATGGTCAAAGAGCTGACGAGGCTGTCTCCGATCTATGAGAGATTCCACTACTGCTCAGTTTCGTCGAGAAATGAGGTTCTGGCCTGTTGCATCATGAATGATGTTCTCTTGTACTCACTCAGTTCTCCTGAGGAAGAGTCCTTTTACTGCCGTCTACCTCCCGCTCATTCAGGGCAAATCCAATTTTGTCAGTTTTTGAGAGAAACCCATTACTTGATTTCGTATGGGATCGATGGTGCAGTGTTTCTTTGGGAATTGATTCAAAGGAAAGCTAAAGCTAAAGCGTATGCAAGGGTAACCGAAAGAGAGGAAAGTATTTCAGGCATGTCTGTTTCTAGTATGGAGGACGAAGTTGTGTGCTTGACTTCCTTGGGCAGAGTAATCACGATAAAACTTCATGGGTTGAAGTCAGCAACAAAACCATCTCAAGAGCTGTCAGAGGATGCGATAGAAAACTCATTAACATTTGCAGCTGGTAGTGGGTATCTGACACAGGAAGCTCGAAGTAGGGAAGTCGAGAAAATTGATCTTGATGAATTGTATGAAGAAATGGATATCGTGATTCTGTCTGACAGAAGTGATGATGAAAGTGACATCGAAGAAATACAGGACGAATCGCAAAGGCTATGA

Transcript

FUN_034823-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001211 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050630 all species →	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011048 all species →	Homologous_superfamily	Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720 all species →	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_034823-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.