Gene detail

Detailed information of FUN_034861-T2 in Dendrogyra cylindrus

Genomic Location: contig_119:913880...942955
NR annotation: XP_044174807.1, EF-hand calcium-binding domain-containing protein 4B-like isoform X6 [Acropora millepora]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_034861-T2

ATGGCCGAAGACCCAGATCAGCTGAAACAAGTGTTGAAGGAACGGGCAGTAGAGCTGTATAATCTGTGCGACCAAGACGGGAAAGGCTATATCACCGATAGCGAACTTCAGAATGTTATCGCTGAGCTCGGACTACCTCTCGATACAAACCAAGTTAAGCAGACTTTCAATGAACTCGATGACGACGAGAATGGCTACTTGACTTTAGAGGAGTTCACAGCGGGTTTTGGCCTGTTTTTGGGCATTCATTCGGACGATGAAGGCAATGGCGAGCTGGAAGAAATCACGTCAATCAGCGACCCCGGTCGAGAGCTGTTCTTTTTGTGTGACCCAGAAGGCAAGGGATTTATCACGAAATCTGATTTAGGACGCGTGGCTGAAGACTTGAACTTGAATTTCGAACAGcttgattttatttttgataAGCTCGACATCGACAAAAACGGACGCTTGACGCTCGATGAATTCGTCGAAGGGTTTGGCACATTTCTCGGCGAAAGTAACGGTACATCGGAACTCGACTCGTCAAAACACGACGCCAATTTGAACGATGAGTTTACCAAGGAAGGCCTACCGGAGGGACATGATATTTTCGAAAGTTTGGAAGCTGGACCAGAATCTCCAACGCATGCATCAGAAGAGGCGCTATTTCGAGAAATTGTGGAAAGCGTTGGTGAAGACATTTTCACGGGATCCCTGACTAAAGACCAGCTGCGAGACTTGTGGGAGGCTCTTCGCAAAAACGATGTACGCGGACTGCAGAAATTCGAGGAGTTTTTAGGCAAAGTTTCCGGCGAGATTCGGCGAGCAAAAATGGACTCGGAACAGCTCGAGTCAGCTCTCAAAAGCAAAGCAAACTCTCATGATAAAGAAGTTCAAAAGCTGTATGAGGAGATGGAACAGCAAATAAGAACTGAGAAAGAGAGAATTCGTAATGAGCAAATAAAGCGGGAAAAAGCTTTGAAGGATGAGCTTCTCCGGGAACTGGAAAACAAGGAATTAGAAATGCAGCTTCTTTTACAAAGACAAAAATCACTGGAAGCAGAAATCCAAAAGAAGCACGTAATGGAACAGGACATTaagaatgaaaacgaaaagctCTTTCAGaaaacaatacatctgGAGGAGATGCTGAGTAGTTCTGTCAGCTCGTTGGAAGATACAAAGAGTTACGTCAACCAACTTCAGGCCCAAACTGCCATGGAGAAGAAAGAAAGGGCCAGGGCGGCCATGCGAGTGTCAGAGGGTATGCAAAAGGAACAGGCGAGCCTCATCAAACAGTTGGATATGCTGAGGGATATGAATCAAAAGCTTCGAGATGACAAGGACGCTATTGAGGCTGCGCATGAGGCGATGTTAATGGCTAAGAAGACCAAAGTTTCTCGCCAAGGCTCACAAATGTCCAAGTATGTTAAAAAGAGACGTGCCCCCGCACCAGAGGAGACATGGGGGAACCAGGGGTCTGTGGAATCTATAAGTGGAGAGGAAGTTGACGGACCTAATAACAGAAGCTCAGTGACCCTGCACGACTCTATACAAGAAGAGGCTGAATTTGACGGTGATCCAACGCTGGAACTCATTCCAGACGACAAATTAAAAGAAGATGAAAAACCTGCGTGGGCCAAAAAAATTTTGTCTTGTGTACAGCCTAAAGAAATTGCAAAGGAGccggaagaggaagaggaagaggaagacaTGGCGAGGACAAGCGATGATGAAGAACTTGAAGAAGATGTGTTTAGGAAAAGGAAAGCTGAACTGATATCTGGGACAGCGCCCAGTAGATTGAGAGGAGGAGAGGATGAATCCGACATGTCTTATTCAGAGGGATTGAATGGCGAGACCGGCAGTGAGACAGATGACAGACCAAACTCACCGCGAGCAGCACCTGTCGGCAAGGACAACGAAATGTGTCGCACAACATCACAGGACATGAGTGAAGCTGGTGTATCCGCCATAAGCGAGCCTTCCACACCGGAGAGAGTCTTCAAAGTAGTGTTTGTCGGCGACTCGGGTGTTGGCAAGTCAAGTTTTATCCACCGGTTTTGCCATGACGCCTGGAAGCCTTCATTTACCGCCACGATAGGTAATACATCTTGTAATGCAGTTCCACACAGCGGTTAA

Transcript

FUN_034861-T2

GAGTAaagttttcgcacgtttctaggTAGCTGGCTGTCGGGCCATGCATGCATGTTTTAGAACTTTGATGACTCGAGAGTCAACACAGCTAAAGAAAATGTAGCAACGCTGCATAATTATCCAGTCTACGAAAGCTTCCCGACCAGACTTGTAAACTTGATTCCGGCGAGAGAAGACTCCAGTATCGCCCGTAGAGAAGATATGGAGCAGCGATATTGAAGCGAGTTTGTTGATTTTAGCGTTAAGCAGATCTTCCAGCAATTAACACTCGGGAATTGCGCTCTTGTATGGCTTGGTTTCTGCCGATGTGGTTTGAACAATGGCCGAAGACCCAGATCAGCTGAAACAAGTGTTGAAGGAACGGGCAGTAGAGCTGTATAATCTGTGCGACCAAGACGGGAAAGGCTATATCACCGATAGCGAACTTCAGAATGTTATCGCTGAGCTCGGACTACCTCTCGATACAAACCAAGTTAAGCAGACTTTCAATGAACTCGATGACGACGAGAATGGCTACTTGACTTTAGAGGAGTTCACAGCGGGTTTTGGCCTGTTTTTGGGCATTCATTCGGACGATGAAGGCAATGGCGAGCTGGAAGAAATCACGTCAATCAGCGACCCCGGTCGAGAGCTGTTCTTTTTGTGTGACCCAGAAGGCAAGGGATTTATCACGAAATCTGATTTAGGACGCGTGGCTGAAGACTTGAACTTGAATTTCGAACAGcttgattttatttttgataAGCTCGACATCGACAAAAACGGACGCTTGACGCTCGATGAATTCGTCGAAGGGTTTGGCACATTTCTCGGCGAAAGTAACGGTACATCGGAACTCGACTCGTCAAAACACGACGCCAATTTGAACGATGAGTTTACCAAGGAAGGCCTACCGGAGGGACATGATATTTTCGAAAGTTTGGAAGCTGGACCAGAATCTCCAACGCATGCATCAGAAGAGGCGCTATTTCGAGAAATTGTGGAAAGCGTTGGTGAAGACATTTTCACGGGATCCCTGACTAAAGACCAGCTGCGAGACTTGTGGGAGGCTCTTCGCAAAAACGATGTACGCGGACTGCAGAAATTCGAGGAGTTTTTAGGCAAAGTTTCCGGCGAGATTCGGCGAGCAAAAATGGACTCGGAACAGCTCGAGTCAGCTCTCAAAAGCAAAGCAAACTCTCATGATAAAGAAGTTCAAAAGCTGTATGAGGAGATGGAACAGCAAATAAGAACTGAGAAAGAGAGAATTCGTAATGAGCAAATAAAGCGGGAAAAAGCTTTGAAGGATGAGCTTCTCCGGGAACTGGAAAACAAGGAATTAGAAATGCAGCTTCTTTTACAAAGACAAAAATCACTGGAAGCAGAAATCCAAAAGAAGCACGTAATGGAACAGGACATTaagaatgaaaacgaaaagctCTTTCAGaaaacaatacatctgGAGGAGATGCTGAGTAGTTCTGTCAGCTCGTTGGAAGATACAAAGAGTTACGTCAACCAACTTCAGGCCCAAACTGCCATGGAGAAGAAAGAAAGGGCCAGGGCGGCCATGCGAGTGTCAGAGGGTATGCAAAAGGAACAGGCGAGCCTCATCAAACAGTTGGATATGCTGAGGGATATGAATCAAAAGCTTCGAGATGACAAGGACGCTATTGAGGCTGCGCATGAGGCGATGTTAATGGCTAAGAAGACCAAAGTTTCTCGCCAAGGCTCACAAATGTCCAAGTATGTTAAAAAGAGACGTGCCCCCGCACCAGAGGAGACATGGGGGAACCAGGGGTCTGTGGAATCTATAAGTGGAGAGGAAGTTGACGGACCTAATAACAGAAGCTCAGTGACCCTGCACGACTCTATACAAGAAGAGGCTGAATTTGACGGTGATCCAACGCTGGAACTCATTCCAGACGACAAATTAAAAGAAGATGAAAAACCTGCGTGGGCCAAAAAAATTTTGTCTTGTGTACAGCCTAAAGAAATTGCAAAGGAGccggaagaggaagaggaagaggaagacaTGGCGAGGACAAGCGATGATGAAGAACTTGAAGAAGATGTGTTTAGGAAAAGGAAAGCTGAACTGATATCTGGGACAGCGCCCAGTAGATTGAGAGGAGGAGAGGATGAATCCGACATGTCTTATTCAGAGGGATTGAATGGCGAGACCGGCAGTGAGACAGATGACAGACCAAACTCACCGCGAGCAGCACCTGTCGGCAAGGACAACGAAATGTGTCGCACAACATCACAGGACATGAGTGAAGCTGGTGTATCCGCCATAAGCGAGCCTTCCACACCGGAGAGAGTCTTCAAAGTAGTGTTTGTCGGCGACTCGGGTGTTGGCAAGTCAAGTTTTATCCACCGGTTTTGCCATGACGCCTGGAAGCCTTCATTTACCGCCACGATAGGTAATACATCTTGTAATGCAGTTCCACACAGCGGTTAAAAGTCACGCGCGTGCGCATTTCCCTCCAAAACAGCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UP38	EF-hand calcium-binding domain-containing protein 4B OS=Mus musculus OX=10090 GN=Cracr2a PE=2 SV=2
A1A600	EF-hand calcium-binding domain-containing protein 4A OS=Danio rerio OX=7955 GN=cracr2b PE=2 SV=2
A0JP75	EF-hand calcium-binding domain-containing protein 4A OS=Xenopus tropicalis OX=8364 GN=cracr2b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000048 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051111 all species →	Family	Calcium-binding regulatory protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46311 all species →	CALCIUM-BINDING PROTEIN 8-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0032588 all species →	Cellular Component	trans-Golgi network membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17199	RASEF, RAB45; Ras and EF-hand domain-containing protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.