Detailed information of FUN_034901-T1 in Siderastrea siderea

Genomic Location: contig_38:5582107...5658288
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14858
all species →
CFAP54_NCilia- and flagella-associated protein 54FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027912
all species →
FamilyCilia- and flagella-associated protein 54Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33487
all species →
CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0060271
all species →
Biological Processcilium assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25553CFAP54; cilia- and flagella-associated protein 54-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_034901-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
73TPM > 0
7Conditions
247.3Max TPM
87.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 15 92.19 213.99
holobiont · low.pH Control.temp 20 18 88.22 247.25
holobiont · control.pH_high.temp 20 17 94.33 185.19
holobiont · control.pH Control.temp 19 17 97.21 231.08
Whole organism 4 4 13.23 16.51
unannotated 1 1 4.64 4.64
live coral tissue/skeleton 1 1 8.35 8.35

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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