Detailed information of FUN_034976-T1 in Siderastrea siderea

Genomic Location: contig_38:6848757...6861017
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009200 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15259
all species →		GTSE1_NG-2 and S-phase expressed 1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032768
all species →		DomainG2 and S phase-expressed protein 1, N-terminalInterproscan
IPR026657
all species →		FamilyProline/serine-rich coiled-coil protein 1/G2 and S phase-expressed protein 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21584
all species →		DIFFERENTIAL DISPLAY AND ACTIVATED BY P53 DDA3 /G2 S PHASE EXPRESSED 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008017
all species →		Molecular Functionmicrotubule bindingInterproscan
GO:0015630
all species →		Cellular Componentmicrotubule cytoskeletonInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10129GTSE1, B99; G-2 and S-phase expressed protein 1-p53 signaling pathwayko04115deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_034976-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
73TPM > 0
7Conditions
604.1Max TPM
128.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 13 68.98 206.19
holobiont · low.pH Control.temp 20 19 211.89 365.07
holobiont · control.pH_high.temp 20 16 110.95 604.07
holobiont · control.pH Control.temp 19 19 158.38 457.93
Whole organism 4 4 8.10 10.49
unannotated 1 1 6.47 6.47
live coral tissue/skeleton 1 1 7.01 7.01

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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