Gene detail

Detailed information of FUN_035065-T1 in Acropora pulchra

Genomic Location: ptg000025l:3405648...3414439
NR annotation: XP_029200546.2, E3 ubiquitin-protein ligase AMFR-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_035065-T1

AAATAAAGTTATTCTAAAGATCCTTAAAGGAGTACTGGGCACGAGTTCCCATGTGACGTCTAGCTTACTGAAGATGCTCAAGTAGCACAATCGTTCAACCACTCTGAGGGTGTTTTTCCCGTGAATATTCCCTTTTTTAACATTTGATTTCACTTTCCCTGCGTTAAAGATCATCAAGGAACAAAAATGCCGTTGGTTTTCCTTGAACAGCTTCCTCTTCCCACACTAAAATCTTACGTGGTCACCAGTGTGCTGCTCTTTGTGTCCGCCATTCTTTACGCTTTGAATGCCACTGTGGGTTCAGGTGAAAGCGATTATTCGAAAATCTACGATTTCGTCACTCAGGATAATTTTTGTTTTTGGTCGAACCTTAATTTGGCTTACTGTTGTTTATTCTTGTTCGGGAAAGTTATTCAAAGAGTTGTGTTTGGCGATCTTCGTGCCAGTGAACTTCAGCAAATTCAAGACAGATTTTGGAATTTCATATTTTACAAATTTATCTTCATATTTGGAGTGCTTAATGTTCAACAAGTCACAGAGATAATGTGGTGGACCGCTTGGTTTACTCTACTGGGATTCTTCCATCTTTTCACACAGCTCTGTAAGGACAGGTTTGAATATTTATCATTTTCACCAACAACAACTCCATGGACTCATGCAAAAGTCATTGGATTGCTTAACGTTCTTGCATTATGCTGTAATGGACTTCTGTTTATCTGTCTTTTTGTCGGCTGGCCAGATGGCATCCATACTTTTACCTTCATGCTGGCTGAGTGTATGCTTTTGCTGATCAAAGTTGTCCATGCACTCACAAGATATGGAATCCATCTCTGGGATGTAGGGCACACCACTATGTGGGAAGGAAGAAGCACATGGAGTTATAATACGGATCTTACTATGAGCTTAGCAATGTGCATTGTAGATTTTGCCCATCACATGCACATGTTGTTATGGTCAAATATATTCTTGAGTATGGCCAGCTTGGTGCTGTGCATGCAACTTCGACATCTCTTCTATGAAATCCAGAAAAAGCTGGCCAAGCACAGGAATTATCTCAGAATCATTAAGTGTATGGAATCAAGGTTTCCCTTTGCAACTGAAGAGCAACTGATGAAGAATAATGATGACTGTGCTATTTGTTGGGACTCCATGGAGACTGCGCGGAAGCTGCCGTGTGGTCATCTTTTTCACAACTCTTGCCTGAGGTCATGGCTGGAGAATGATACTTCTTGTCCCACTTGCCGTCAGTCATTAGCAAGTGATCTACAACCTGAACAGGAAGACGAAAGGCAGCCAAGAGGGATGGCAGCTTTCATGATGGGTCGTGGCCTTAGGAGAAATCACTTCTTTCATTTTGATGGTTCGCAGATAGCCAGTTGGTTCCCAAGCTTCTCCGTAGAGGTGATGCATACACGAGGCGATAACCTAGCAGAAGGACAACTTCCTGAAAGTCGCATTGAAGCTATGGCTCATCAAGTACAAGCGATGTTTCCTCACATGCCATTTAATATCATTATGGATGATTTAAGACACACTCATTCCCTCGAGATCACCACTGACAATATTCTAGAAGGAAACATCGCTGTTCCCTCTGTTTGGACTCCACCAGATGAACAGGGTGCACAAGAAGATTCGGAACTCTTGCAGATAGCTCAGCCAAGCGGGGAAATCGAAAGTTACCCTGAGGAGGAAGAACGTGCACCGGTCTCAACGACAGAAGACAGACAGGACGCGGAAGAATTCGAAGCGTTTGAAGAGAAACCAGAAACTACAGATTTACAAGAGACAAGATCAAAAGCTTTGGAAAATCCGACAATGGGAGTGATTCACCGGAACGCCTCATCGCCATCTCTGGGATTTTCTTCATTGCCTTCCGGAACAAGATCAACAACTGGGGAAAATCCAACAGTGGGGGTGATTCGCCGGAACGCCTCAACCTCATCTCTGGAATTTTCTTCATTGCCTTCTGTTAGACAGTCTATGTTGTTGTCTAGAAAAGAAGAAATGTTGCAACAGGCGAGGAGACGGTTCCTTGACCAAGAAGGCGTCAAAAAGAAAGAATCTTCTGATTAATGCCGCAACATCTGCGTTTTGCAATAGCCTACAAAGTTGGCAACCCTTGTTAGCCGTGCAGTCAAGCGTAGGAGTTGTGGCAGGGCTGAGCAAATCGGCTCCGATCCGCCGCTGCGCTGTGCAAAGGGGATTACAGTATTCACAGCTTTGTACGAGTGCATCTCCACATGGATATGAAACGGCTCTTCTTCAAGACATTTTCTGAAAAAAAAAAACACGTTTTCCTGCCAATCCTAGGAGGCCAAAGTTATGATTAATAATTTGCCACGATACGTGTCGACTTTAAATAGCTAGATTCACCGGAAAAATAGGAAACTTTTCGACGTTGGTGGTAAACCTCTTCGATTTGTTGGAGTGAAAAACCTTGTAAACTTTAGGAAACTCTGAAAAGTTTCAATCTGGAATTTCTGTAAAGAAAGTTGAAAACCATTTAGATGTACCAAGTGCAATATTGTTTCCATTTTGGAAAATTTACTATACATTTTGAACAAACCGAACTCTCGATTTGTTCATGTCAAACAACTCACCTCAGATCAAAACCCAGTTAGTCGAAGTAAACTTTAAACTTGTAAAAATGAGACATGTACTTTCAAATATATTCGATTTCGTGTAATTTGCCCCAGATACCAATGAATTTTGGGTTAACGTGGGTTTTCTCTTATCTCATGGCAGTGGTCTCGCACCGGGATATGTCACAACTTTTATAAAGACCTTCGCAAACGAACGAGGCATTGTTTCTTGCGTTCAAGTGACTGTGAGCAAAAGATGTGTGGAAGTTTGGAGAGAACATTTTCATTGTCGAGGTGTCACGTTCTCATTAGTAATTTCACATTTGTTCATTTTGATTTGCTGTCTGAATTGGCGACAAGAACACCCAAGAAATTCGAAACGCAATGATCGAAACAAGTGCCTTTATGTTCGCTGTTTTTGTTTTTCAACGTCGGCCTCGCTTAAGCTGCCATTTTTCTCCTTTATTTCGGCGCTTGTCTTTCTTTCATGATCCCTGTTGTGAAATAATGAACATTTAAAACTATTGGGGGGTGTAAATTTTTTATGGGTGTTGATGTAGATCTCGAAAGAAAATGAATTAAAGTTTTAGTAGAATAGTGGGCTAACCTTTTCTTATTTTTCGTTGGAATTTCATTACAAAATATCTTCAATCCTCTCCATTGAAAAGCCGAAGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1QB30	E3 ubiquitin-protein ligase AMFR OS=Danio rerio OX=7955 GN=amfra PE=1 SV=1
Q9R049	E3 ubiquitin-protein ligase AMFR OS=Mus musculus OX=10090 GN=Amfr PE=1 SV=2
Q9UKV5	E3 ubiquitin-protein ligase AMFR OS=Homo sapiens OX=9606 GN=AMFR PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006375 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|CUE · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18442 all species →	G2BR	E3 gp78 Ube2g2-binding region (G2BR)	Domain	Interproscan
PF02845 all species →	CUE	CUE domain	Domain	Interproscan
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040675 all species →	Domain	E3 ubiquitin-protein ligase AMFR, Ube2g2-binding region	Interproscan
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15067 all species →	E3 UBIQUITIN-PROTEIN LIGASE RNF8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070936 all species →	Biological Process	protein K48-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10636	AMFR, GP78; E3 ubiquitin-protein ligase AMFR	EC:2.3.2.36	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.