Gene detail

Detailed information of FUN_035086-T1 in Acropora pulchra

Genomic Location: ptg000025l:3601127...3604748
NR annotation: XP_015777041.1, PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_035086-T1

ATGTACATAATTCAAGCAACCAGCGGAACTCGAGACACTATTTTATGCCCCGAGTGTCGGCGAAACTTCACTATCCCTGGAAACGGTGATCTCAACACTTTGCCGACAAACTTTCGCCTGAACAGTTTGCTGGATGCTTTGCCCGTCACAGAGTGCAAAGCGAGTGGTGTTAAGTGTGGAAATTGCGGCAAAAGCAGACAAGAATCTGCTTACTGCTTCACTTGCTGTTCGTTCTGGTGCCATGATTGCCTTCCTTTACATAACGGGATAAAAACTTTTAAGGAACACCACACGTTGGCTCTGAAAGATTTTGGAGATGAGGACTTTCAGAACATTTTCAAGCGGCCAACATTTTGCCCAAAACACGAGAAGAAGGAATTAGAGTTGTTCTGTCGGGTATGCGAAATAGCAATATGTAATTCGTGTGCTTTGATAGATCACGAAGGTCACGCTAAGATTGCCTTGGAAGACGCTGCAAAAGAACAAAGGTTCAGAATAAATAGTGCGATTGAATCTAAGAAACGAAAGGTGCAGAAGAAGCTGACAAGAATCGCAAAACTTGGTGAAAACAGTGTCCAAGTTCAAGAAGACGCAGCAAGAGTAAAAAGCGACGTACAACAGTTTACTGACAATCTCATTGCAGCCATTGAAGCGAAAAAGAACAAAATCTTTGATGAGGTAGAAAAGACAGCAAAACAGTGCCTGAAGCGACTAGGAGACAAAAGTCAGGAGATTGGAGAAGAAATGAAAAGGGACCAGACAGCAATCGAAAAATGCGACAAGATGTTAAAGCGAAGCACAAACGCTCAAATCATGCAGCCAAATGAATTTCTAGAACAACTGTTTCGGGTGGGAAGTAACCAACAAGACACAGTTGACCTTGACGGTGAGAATGTCATAGATTTTGCTTTTGAAAGAAATGGGCAATTGTTCAACTACGTTCACGCTGAACAACTGGGCGTTTTGAAAATAAAAACTAACCCGAAAGAGTCGACGGTTGAGGGAAAAGGAATCAGCGAAGGAACTGTTGGACTTTTGGCCGAGATTGTTGTCATAACACGGAACATTATGGGAGAACAAGTCTACGATCAAAATAACCGCATAACATTGGAAATCAGAAATGATGAAGGACATGACTATTCAACCAAACCCCAAATCAACGACAACAAAGATGGCAGCTATAAGATCAGCTACTTTGCCAAAGAAACCGGAACATGTCAAGCATCCGTGAAAGTTAATGGACAACATGTGCGTGGCAGTCCCTTCAAAACTCAATTCAAACCCAGACTTTTCAAACCCGTGTTATCTTTTGGAAAGCGAGGATCAGCTCCTGGGATGTTTAATTCGCCTTCGACGGGGATATCAGTGAATGACAAAGACGAGATTGTCGTGGCTGATAATGGTAACCATCGCATACAAATATTTCATGCTGATGGAACTCACTTAAGATCTTTTGGTAGACAAGGTACACAGCAAGGACAATTCAACTCTCCTCATGGGATAACTTTTTATAATAATAACATTATAGTGTCTGACACTGCTAACCAACGAATTCAAATCTTTGATGATCAGGGACACTATCTTCATCAGTTTGGAGAAAAGGGAAAACTCAATCACCAGCTTGATCTTCCTCGTGGGCTGTCAATTGACAGCGATGGCAACATTATTGTCGCTGATTCTAATAACAAATCAGTCAAGATCTTTACCCTAGATGGTCAGTTTTTGCGTAGAATTGGTGAAAAAGGTTCTTTCATCAATCCCGTTCACTGTATCCAACACGACAACTATTTTATTGCATCGGACACTGGAGATAATTGTATAAAAGTTTTTGATAGACAGGGCAAGTTTCTTTACAATCTCGGAATGAGGGGGGCTGGAGACGGGGAGTTTAATTTGCCCCGCTACCTGTCTGTGGACAAAGCCGGACATCTATTGGTTTGTGATTCATGGAATAACCGAGTGCAGGTGTTTGAACTCAACGGAAAGTTTATAACAAAGTTTGGAGCATTTGGCACGGAAAAAGGAAAGTTCCGTGGGCCAATGTCCACAGCATTCCTTAGCAATGGCAGAATAATTGTAACTGAATTTGGCAACCATCGAGTTCAGGTTTTTGAATAG

Transcript

FUN_035086-T1

Protein

Uniprot

Gene family

Uniprot term	Description
Q6PFY8	E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2
Q9H8W5	E3 ubiquitin-protein ligase TRIM45 OS=Homo sapiens OX=9606 GN=TRIM45 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17170	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12035	TRIM71; tripartite motif-containing protein 71	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala