Gene detail

Detailed information of FUN_035148-T1 in Acropora pulchra

Genomic Location: ptg000025l:4465967...4469098
NR annotation: XP_029206339.2, NACHT, LRR and PYD domains-containing protein 3-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_035148-T1

ATGGTCGACCTCACGACAATCAAGGAAGTAATCAGTCCGAAAACTTTGAGCAAGTTCACATTTGCACTGGTTGTACTTTGGACCGTACTCGGTGCCCTACTTTGTGCAGTATTCCTAGAGTTGAAAATAAATGAACCCAGGTACGATTTTCGCTGCGATGGCACAGGCGAGACCCGAAACATCGATTATATTAGAGGAGAGTGCTTTCATCAATACTGGATACAGAATCATAGACACGGTATTCCTCCTTACGCCTTTATCTTGTTGAATGTTGCTCTAATTCCCATTGTCACATGTATTTACTCTCTATGCGTCAAGTCAACCGTTAATAAACTCGAACGACGCCATCAAGATGAAGAAACAGAACCGAGAGATAAAAGACGAACCCCTTTCATCGCATATGTTTGTCAACTTGCTGTTAACATTGCTTTGGAGATAACTTTCTTCGCCTTGCTAGAAACTCACTTATTTTTTCCCAAGAACTTTCCCTCAAACTTTTCTTGCACTGTCAAAAATCTTTCGGTCAACTGTAACACGACAAGAGCGGGTGAGAAGAATGTTTGGATCACACTTGCCGAGGAAGTGCGGCAAAATCAACCAGAAGCGACGCCTTTAGTGATAGTGGAAACACATAATCAAACTACACATTACGCGGTACTTCGGAAGCACAATGAAACAGCTATGTCTCCGCAACAAGAAGAGATGGCATTAGGTGAACCACAACATCGAGCTATCGATACCTCGGATTACGTGGAACGACGGGAGAACACTGAAATAACAGTGTCTTCGGAACACTTTAAAGACGCTCAAGCGCAAAAGGATTTCCAAAGTGCCATACGGAAAATGAAAGAGAATTGCTTGCACGGCACTGAGCAACCAAGTGATCTTGTACAACCTTTTCAACGACCAAATGACGGCGAAGGCCACGCATATGATCTCACAATGGACGATATCTACGTCCATGTAGCAATCCATGAAGGGAGAGCTCACCATCACTTTGCGGAAAATCTAGACAGGGGAAAACAGCTCAAAGAATACCCGCCCGATGAAAAGCACTGCCAGTTCGCAAAACCAGAGGATATTCTTGACAAGGAACACAAAAATGTTCTCGTTGTTGGCCGTCCTGGGATAGGAAAGACGTCATTCAGCACAAAGATGCTTAGACTATGGGCATCTGGTGAAGCGTTTAATAGAGACGCACTCGTCTTCAACGTTGTCCTCCTTGTGAAGTTTAGGCGCTTTAATGATAACCCAAAGTTGAGCCTTCGTGATCTCTTGACTCGCGCAGAAACAGTCGAATGTTTGGATGATTCTGTTTGGGATGTAGTCCAAAACGAACCTAACAAAGTTCTCTTAATTTTCGATGGAGTGGATGAGTTTTCAAGAAAAGAGGATATCCTCGCCCAAGAAGATTACAAGAACGATGTGAAAGAAAAGATGCCCGTTTCCGTTTTGTATAAGAAACTGGCAGCGGGACAACTTCTTCGTGGTGCGAGCATACTCACAACTACAAGACCAAAAGCTGTGGAATATGTTTCACGAGTAAGATTTGAAAGAACAGTGGAAATTCGCGGATTTACATCCAAGAATGTTGAAGACTACGTCGAGAAATTTTCTCGAGATTGTAGTGGAGCAAAAGAGAAAATTTGGGAACACATCAAGTCCAACACAAATCTTTTTTCTTTGTGTTACATCCCCGTGAACTGTTTCCTCATTTGCCACTGCTTGCTCCAAATTATCCTGTGCGACTCTTTCACGCAGCTGCCGACGAAAATAACCGACATCTATCAAATGACCGTAAAGATGGTCTTCTTCAACCACAACAGGGAAAAATGGTCTTCAAATAAACTCGAAAAGTTAAAGAAAACGCACATGTATCAACCATTTGAAAACTTCCCTGATGAACTTAAAGAATTCTTCAACAGGATTGGAAAAATCGCTTTGAAAGGGATTAAAGAAGGAAGACTGCTCTTTGCATCAAGCGAAGTCAGTGGGTTGGAAGATTGTGGACTGCTTCACGAATTGCCAAACCTAAAACCAAAGCGGCCATTGAATGATCCGCCGAAGTCTCAATTCTGTTTTACTCACCTGACTGTGCAAGAATTCTTTGCCGCAAAGTATCTGGTGGACACCAAATGCAAGACAAAATGGAAATTTGAAAGAATTGTTCGCAAGCATATCAATGACGGCACATGGCAAGTGGTACTGCAGTTCGTAGCTGGATTGCTGAAGGGTTCAAGCAGCGACATTTTTATCACACTATTGCCGAAGTCGAATAAGAGGAGTGAAGACCGTATAGCTTCAGAAGGAAAGACACTGACCTATTGGCCAGCGACAGAAGAAGACAAATATCTAGCTGTGCAAGTATGTAAGTGTCTGTACGAAATTACCGATGAACAGCTGCTAGTATTACAAAACAAAATAGAGAAAATTAGATTCAACGCGGTTGATTTTAGTTTTTGTTCACTCGCACCGAGTGATGTTGCTGCAGTCTTACATTTCTTAGAAAATGCTGAAGAAGTTTTGAGCATTGATTTGAGGATGAATGCGTTAGGAGACTTGGGAGCAAACGAAGTGAAAAAATTTATTGTTAACAGGGAACGCAAACTAAAATCTTTAAACCTCTATGATACCAACTTAACCGACAACGGAGCGAAGGATTTGGCTGAAGCACTTAAGCACAGTAATTGTAAACTAAAATCGTTATTCCTCAGTGCTAATAACTTCACCGACAACGCAGCGAAGGATTTGGGTGAAGCACTTAAGCACAGTAATTGTAAACTAGAATCGTTAAACCTCACTGGTAACAACTTGACCGACAACGGAGCGAAGGATTTGGGTGAAGCACTTAAGCACAGTAATAGTAAACTAAAATCGTTAGACCTCAGTCGTAACAACTTCACACAGAAAGCAAAACAGTATTTAACCGACGCAGGAAGGCAAAGTAATTGCGAAGTTTTTGTGAGAGGTAGACAAGCCATAGATGTTGAATACTTTTATTGA

Transcript

FUN_035148-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K3Z0	Nucleotide-binding oligomerization domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nod2 PE=1 SV=1
C3VPR6	Protein NLRC5 OS=Mus musculus OX=10090 GN=Nlrc5 PE=1 SV=2
Q6E804	Nucleotide-binding oligomerization domain-containing protein 2 OS=Bos taurus OX=9913 GN=NOD2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000076 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17776 all species →	NLRC4_HD2	NLRC4 helical domain HD2	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR041267 all species →	Domain	NACHT, LRR and PYD domains-containing protein, helical domain HD2	Interproscan
IPR050637 all species →	Family	NLRP family, innate immunity and inflammation regulators	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR038359 all species →	Homologous_superfamily	Connexin, N-terminal domain superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45690 all species →	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_035148-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.