Gene detail

Detailed information of FUN_035155-T1 in Acropora pulchra

Genomic Location: ptg000025l:4619965...4633011
NR annotation: XP_029196880.2, VPS9 domain-containing protein 1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_035155-T1

ATGACTGAAGGCATTGGTGATTGCATGCCACTAGCTCTTCGATCAGTCGGAGACGCTGTAAGACTTGACTCGGAGAACAGAGCTAAGGAAGCATATTGTCAATACCTTAGCTGTATGATTTATATTTCACAAGTTTTGAAAGATGATGCGTGGGATAAAGATTTACAACAGCTCTACAACAATGATACAGTGAAATTATTTCGATTACTTCAGCACTGCCGGGAAAGAGCTTTCACGATTATTTCTTCTTTGGGAAATGGCATGTCGTCCTTCCAGACGCCTGATGAAGGTGTTCAGCTGAGTCATGTTGAAAGCAACACTTCCAGTTTGAAACAACTGGATCAATCGTCCTTTGTACCTCAATCTGCAGTAAAACCTAAACTAGTTTCAGAGCCATCAATTCCTCCAAAATCCACATTGACGACACCCACAGATGAATATCTCTGCCTTCCTTCACCTCCTGTTTCCCCTAAACCACAGCATCGAAGGACTGGCAGTTATGATCCATTGGAGAAAGCTTATCAAGAAAACAAGCAATTGATTGCAGCATACAGGAGAAGAATACAGAATGCAAATAAAGGAAGAAGAAATCAGGATGGGATATCAATGAATCTTGGTTTAATGCGGAGGATGTCTGAAAATCTTGTCATTGCCCAAGCCAGGGAACAAGCTATCAAAAAGAAACTTCAAGAACGACAACAAAGACTCCAGGAAGAGACCAACAGACGGTTTGGACCTGCCGTCTTATCCACGAAAGAGCAGGTTGAGCAGCGTGATTTGTACAGAAAGATTTTGGAGTTTGAACAAGAAACGGTATGGCCAAAGCATTTACGTGACCGGTTGACACTTATGCCTTCGGATGCTAAATTGATCAGAGAAGTGATTAACAAGATATTTAGTTCGTCTGACCACCCTCTGACCCAGTTCCTTCTCCAGTACCAATATCACGTGTATCGCAAACTGGCACCTCTAGTGAAGGATGTTGGAATCCCGAGTGTGGGAGTAAAAGACAAAGCTGTTTCAGACAAAGACAGTGGAACTGTGTTGAACGAAACTAGTTCTGATAACGAACAACCGACGGAAATGATAAACAATTCAAATGTTAGTGAAGGAGCTCGACTGGATAACTTGGAATGCAGAAAAGAAGACGAAGAGAAGACAGCGCCAACCGAATCTGTTGTCAACGAAATAGAGGACTTTGTCGAGGGAAAAACTGAGGAAGGAGGAGACATCGAGGATAAAAATTTTCAGGGAGTATCTAGCGGGGTTGAACAAAGCTCTTTATCAAACGGTAACGATGAAAATCTTTGCTCGAGGACGGATTTAGAGAAACTTAAAAATCTTCTCGATAAAACCGCTCTAGATACTTCGACAGTCGAGAATATTAAGCAAGATGAGAAATCTCAAAATGAACTCAAACCTGATGCTCTTGATGAAACGGACCAATCTTCAAATCTTGAGGATTATTTCCAAGAACTGGAGGATGAAATGTTTGATTGGGAAAGCAATGAAGAGGAATCTTGTGAGACTGAGAATGAAAATAGCGTTGAGTCTGAGAGTCAAGTTGTGGTAAGTGAGAAATCAGTGGAGGTTCAACCTGGAGGAAATTCTTCCAGAGGGTTGGATTCGTGCGCGCGAAGAAATGAAAACTTGGTCGAGCAGACCGTGGGAGATGATTTAAAGGCATGTGACGAATTGCAGCATTTAGCCGAGGAAGAAAACGAACCATTGGATTTATGCGTGGGAAGAATCGAAAACTTGGTTGAGGAGACCGTTGGAGATCAATCAAAGCCGTGTGAAGAGTTGAAGGATTTGGCTAAGGAAGAAAAGGAACCGAAATATGTCGAAGAGACTAGCAATGAAATTGTGGACGTGAGTGATACAGTTTCAAACAAGGACGAGCAATTTACCTGTGACCTTTTGAATGAAGCAAGAGGCCATGAAAACGATGGGGAAGGTATGTTGAAGGAATCTAGTTCAACTGAAGGAAAACTCAACGTTGACAAGAATGAAGAGGATTCGCCCACAGGCGCGTTTTTAGGAGATGAACCACTCGAGGAGAAAGAGAAGCAAAGTGTTGTGACGGATCATGATGATCATTGCCTGTCCAATTTGCCTCCACGAGAGGAAAGTAGTGCTGATAACAAAAAAGAAAATCGTGCAGCGGTATTTCCAAGCGATGAACTCAGGAAACAGTTAAAAGAGATCCTGTTGGATGCTCGATTTTTTCTTGAGAAACTTCAGAAGATGCTTATACTTGCTTACGAGCCATTAGACACGGCAGAGGGCCGAGACCTTTGTTATTCCTGTGTGGAGTTTCCTTTCTTCAAGCCTTTGTGGCCTTCACTACTGGCTGTGCTTAGGCAAGTGAATTACGAAAAAGAGCTTTGCTTAGCCGATGTTATGTCAGATAACATCGGCAAAGGACCTGGCGAACTTGGTGTGCCACAAAGACTTTGCTTGGACAATCAGAAACTGTTGGAGTCCACGGGTAACAAATACCCGTATCAAATGGCTGTTGAAGAACTTTACAAAGTGTTGACGTTAGTTTGTCCATTGGAAAAGCTCGAGTGTATAGTGCGAACATCACGTTGCATTTGTCAATGTGTAGAGGATTACTGGGAGAATAACGGAAAACCTCGTCACAGTCCAGAAACTGCTATTGGCTGCGATGATTTGTTGCCAATTCTTAGTTTTGTGATCATCCAAAGTGGAATAGCGCAGCTTGTCTCTGAATGCGAAGCTATGGAGGAGTTTATACCCGAGGGGTATCTTATGGGTGAAGAAGGATACTGTCTCACGACTCTTACAACGGCTCTTGCATATCTCGCCACCTTAAAACCTACGCAGTCCTCTAGCGAGACCAAGTAA

Transcript

FUN_035155-T1

TCAGTGATGAAGAAGTGATGCTTGGTGATTGTTATCTATTGAGTGTTATTGTTCTAAAATGACTGAAGGCATTGGTGATTGCATGCCACTAGCTCTTCGATCAGTCGGAGACGCTGTAAGACTTGACTCGGAGAACAGAGCTAAGGAAGCATATTGTCAATACCTTAGCTGTATGATTTATATTTCACAAGTTTTGAAAGATGATGCGTGGGATAAAGATTTACAACAGCTCTACAACAATGATACAGTGAAATTATTTCGATTACTTCAGCACTGCCGGGAAAGAGCTTTCACGATTATTTCTTCTTTGGGAAATGGCATGTCGTCCTTCCAGACGCCTGATGAAGGTGTTCAGCTGAGTCATGTTGAAAGCAACACTTCCAGTTTGAAACAACTGGATCAATCGTCCTTTGTACCTCAATCTGCAGTAAAACCTAAACTAGTTTCAGAGCCATCAATTCCTCCAAAATCCACATTGACGACACCCACAGATGAATATCTCTGCCTTCCTTCACCTCCTGTTTCCCCTAAACCACAGCATCGAAGGACTGGCAGTTATGATCCATTGGAGAAAGCTTATCAAGAAAACAAGCAATTGATTGCAGCATACAGGAGAAGAATACAGAATGCAAATAAAGGAAGAAGAAATCAGGATGGGATATCAATGAATCTTGGTTTAATGCGGAGGATGTCTGAAAATCTTGTCATTGCCCAAGCCAGGGAACAAGCTATCAAAAAGAAACTTCAAGAACGACAACAAAGACTCCAGGAAGAGACCAACAGACGGTTTGGACCTGCCGTCTTATCCACGAAAGAGCAGGTTGAGCAGCGTGATTTGTACAGAAAGATTTTGGAGTTTGAACAAGAAACGGTATGGCCAAAGCATTTACGTGACCGGTTGACACTTATGCCTTCGGATGCTAAATTGATCAGAGAAGTGATTAACAAGATATTTAGTTCGTCTGACCACCCTCTGACCCAGTTCCTTCTCCAGTACCAATATCACGTGTATCGCAAACTGGCACCTCTAGTGAAGGATGTTGGAATCCCGAGTGTGGGAGTAAAAGACAAAGCTGTTTCAGACAAAGACAGTGGAACTGTGTTGAACGAAACTAGTTCTGATAACGAACAACCGACGGAAATGATAAACAATTCAAATGTTAGTGAAGGAGCTCGACTGGATAACTTGGAATGCAGAAAAGAAGACGAAGAGAAGACAGCGCCAACCGAATCTGTTGTCAACGAAATAGAGGACTTTGTCGAGGGAAAAACTGAGGAAGGAGGAGACATCGAGGATAAAAATTTTCAGGGAGTATCTAGCGGGGTTGAACAAAGCTCTTTATCAAACGGTAACGATGAAAATCTTTGCTCGAGGACGGATTTAGAGAAACTTAAAAATCTTCTCGATAAAACCGCTCTAGATACTTCGACAGTCGAGAATATTAAGCAAGATGAGAAATCTCAAAATGAACTCAAACCTGATGCTCTTGATGAAACGGACCAATCTTCAAATCTTGAGGATTATTTCCAAGAACTGGAGGATGAAATGTTTGATTGGGAAAGCAATGAAGAGGAATCTTGTGAGACTGAGAATGAAAATAGCGTTGAGTCTGAGAGTCAAGTTGTGGTAAGTGAGAAATCAGTGGAGGTTCAACCTGGAGGAAATTCTTCCAGAGGGTTGGATTCGTGCGCGCGAAGAAATGAAAACTTGGTCGAGCAGACCGTGGGAGATGATTTAAAGGCATGTGACGAATTGCAGCATTTAGCCGAGGAAGAAAACGAACCATTGGATTTATGCGTGGGAAGAATCGAAAACTTGGTTGAGGAGACCGTTGGAGATCAATCAAAGCCGTGTGAAGAGTTGAAGGATTTGGCTAAGGAAGAAAAGGAACCGAAATATGTCGAAGAGACTAGCAATGAAATTGTGGACGTGAGTGATACAGTTTCAAACAAGGACGAGCAATTTACCTGTGACCTTTTGAATGAAGCAAGAGGCCATGAAAACGATGGGGAAGGTATGTTGAAGGAATCTAGTTCAACTGAAGGAAAACTCAACGTTGACAAGAATGAAGAGGATTCGCCCACAGGCGCGTTTTTAGGAGATGAACCACTCGAGGAGAAAGAGAAGCAAAGTGTTGTGACGGATCATGATGATCATTGCCTGTCCAATTTGCCTCCACGAGAGGAAAGTAGTGCTGATAACAAAAAAGAAAATCGTGCAGCGGTATTTCCAAGCGATGAACTCAGGAAACAGTTAAAAGAGATCCTGTTGGATGCTCGATTTTTTCTTGAGAAACTTCAGAAGATGCTTATACTTGCTTACGAGCCATTAGACACGGCAGAGGGCCGAGACCTTTGTTATTCCTGTGTGGAGTTTCCTTTCTTCAAGCCTTTGTGGCCTTCACTACTGGCTGTGCTTAGGCAAGTGAATTACGAAAAAGAGCTTTGCTTAGCCGATGTTATGTCAGATAACATCGGCAAAGGACCTGGCGAACTTGGTGTGCCACAAAGACTTTGCTTGGACAATCAGAAACTGTTGGAGTCCACGGGTAACAAATACCCGTATCAAATGGCTGTTGAAGAACTTTACAAAGTGTTGACGTTAGTTTGTCCATTGGAAAAGCTCGAGTGTATAGTGCGAACATCACGTTGCATTTGTCAATGTGTAGAGGATTACTGGGAGAATAACGGAAAACCTCGTCACAGTCCAGAAACTGCTATTGGCTGCGATGATTTGTTGCCAATTCTTAGTTTTGTGATCATCCAAAGTGGAATAGCGCAGCTTGTCTCTGAATGCGAAGCTATGGAGGAGTTTATACCCGAGGGGTATCTTATGGGTGAAGAAGGATACTGTCTCACGACTCTTACAACGGCTCTTGCATATCTCGCCACCTTAAAACCTACGCAGTCCTCTAGCGAGACCAAGTAAACGCACAAGCTTCGCCTGCAACTCAAAGCCAAACAGTAACTCTCCAAGGCACCAAATGCCGCAAGAGAAATTCGAGCTGATTGTTGCAGTGTTAGAAATGGGAAGGATTAGTTATAGACTGAAATAAAAGCTCTGTTTTTTCGCTGAACTTCTCGCGCAACTCGGATTCCACGTAAATTAGAGGAAGATGTACACTTCTGTTTTTGATATTGCCTTCGGAAAAAAAAAATCCGAGTGCTACAAACAGAAGCCGAGCCATGAAACAATGAATGATAATATTTTCTTCAGCTCATTTTTGCACCTACTCTATGAATTTTAAAGATATCGGGCGAAGCAAAACTGTTTATAAAAACACAACTAAGCACAATAAAAATGTGTCCTAGATGCAAGGTCAGTATTAGGGAATTTAAGCAAACACAACAGCAACTTCGTGGACACGTCTCTTGAAAATTAAGTGTATACTGTCTTGGGTATTTCACGATGATTCGTTTATGTTATGCAACGTGAACCATCGTTAAGTCATGAACAAAGAAATCCGTAACGGGATTCATACAAACTGTCTTGCAGTAAACTGTAGAATGAGAACTTTGTTATTATTAGGTTTCACGTTGTCGTCGAAACGTCTTGTTTTTGTTGTTGTTCCTTTGTTTGTTTGTCTTTTCTTGTTTTTATTTTACCGAATAACCTCATGGAATTGTAGAAAAATGCGGGCAGCACGATCATTTGACTTTAAGATTGACCAGTAGCATCTTTATATTTGGCGTTCCCGTGCATTGGCCGTCATCTTGGCTTAAATTCGAGTTTATCAAGCAGCAACGACGGCAGTGGCGACGAAAACGTCACGTGAAAAAAAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2B5	VPS9 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=VPS9D1 PE=1 SV=2
Q8C190	VPS9 domain-containing protein 1 OS=Mus musculus OX=10090 GN=Vps9d1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02204 all species →	VPS9	Vacuolar sorting protein 9 (VPS9) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037191 all species →	Homologous_superfamily	VPS9 domain superfamily	Interproscan
IPR045046 all species →	Family	Vacuolar protein sorting-associated protein 9-like	Interproscan
IPR003123 all species →	Domain	VPS9 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23101 all species →	RAB GDP/GTP EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030139 all species →	Cellular Component	endocytic vesicle	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27566	GAPVD1; GTPase-activating protein and VPS9 domain-containing protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.