Gene detail

Detailed information of FUN_035340-T1 in Siderastrea siderea

Genomic Location: contig_39:4314859...4331974
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_035340-T1

GTATTCAACATGGCGGCATGTCAATTTCTTCATCGCTTAGAatgtttttctttagtttttctcTGCCTTCGCGTTTTTAGTTCACATCTAGTAACGGCATCAAGTATTAGAGGAGTTTCAGTAACTAGATTATCATTCTATGATCCTTCAAAAGACTTCACATGTTTTGATGGTTCTCTTACAGTGCCTTTTAGTAGTGTAAATGATGATTTTTGTGACTGTGCTGATGGTAGTGATGAACCAGGAACACCAGCTTGCTCCAATGGTATATATCACTGCACAAATGCAGGATTTCGACCCTTGAATATTCCTTCTTCTAGAGTCAATGATGGTATTTGTGACTGCTGTGATGGCAGTGATGAATATGATGGTTCAGTCCAATGTCCAAATACTTGCAAGGAACTTTATAAGGAGCTTTATAAAAAGCAGAGAGAAGAGGCTGAACTTGCAAAGCAGGGACTTGCTGTAAAACAAGACTATAGTCGACAGGGTCAagagaaaaaggaagaaagaaagCAAAAGCTTGAAGAGCTGAAGAAACAGCTGGAAGAAAAGAAAGCAGTCGTGGAAAGCTTAAAAGCTAAAAAAGAAGAAGTTGAAGGGACTGAAAAGGAAGCAAAAGACAAACATGAGAAGGAGTGGGAAGaaACTAAGGCAAAACTATTGGCTGAAAGAGACAGAGCATCGGCAGAGAGTGCCTTCAAAGCCTTAGACACTGATGAAGATGGACGGCTCACAGTCCAAGAACTTGTTGATACTGAACTTTTGgacaaaaaatacaatgatgACGAGGCTAAGGAGCTGCTTGGAGGTTATGCTGAGTCAGACTGGGATACATTTTTCTCTGTGCTGTGGAGCACCTTCAAAGGAAAATACCTTCACAAGCAGCCTGAAACGCCAGCAGCAGAAGAGTCAGAAAAAGGAGAGGGAGATGAAAAGCCAACAGAGGCTGAAGCATCTACGGAggccccaccccctccccctccaatTGATGACCATTTTGATGAAGAAGATCTTCCAGATGTTCCTGGTGATGAAGATGATGAGGACGAGGAGGAAGAAGATGTGGATGATGCAAAAGAGTCTCACGATGAGTTCAAAGAGGAAGCAGAAAAGCGAGCTGCAGAATCTGTAGAGGGGAACAAAGATGATGATTTAAAGATGCCAGATTATGATGAAGAAACACAAGCCAAAATTTCTGCTGCTGATCAGGCCAGGAAAGAATTTGATGAAGCAGAAAAAACTTCAAGGGACACAGATAGGGAAATCAGcGACCTTGAACGAGTTCTGAACCTGAATATGGGCCCAGAGGAAGAGTTTTCTCCACTTCACGGCCAATGTTTTGAATACACTGACAGAGAGTATTTGTACAAGCTGTGCCCATTTGACAAAGCTTCTCAACAGCCAAAAGATGGAGGGTCTGAAACATCTCTAGGAACTTGGGGTGAATGGACAGGTGATCCAAACAAGTACAGTCGTATGAAGTATTCAGGAGGACAAAGCTGTTGGAATGGACCTAGTAGATCAGCTGAGGTGAACCTTCGCTGTGGTTCGACCAATGAAGTGGTGCAGGTGACCGAACCCAGCAGATGTGAATATCTCATGGAATTTAAAACTCCTGCTGCCTGCCAGAATGTTGATGGAGAAGCATCTTTTGATCATGAACATGGTGGAGAGCTGTAGAGACACTTACCTTGTACAGAATTTTCTACTAGAAACAAAAGAGTATTTGTTACAATTCCAATAAATCTTCTCTTTGGATGGCATGTCAGCGGCAAGATGAAAGTGACACAACTGATTGATTACACCTTTAGGCCTCAATAGCAACAAGCATCTAATTTGTGCTCCCAGTATCACAACTAGATCAAAAATGTAGTCCATGAGAATAAAGTAATTGaccaccaaagataaaatgtcttgatgtttaaccctttaagcccgaatagtgatcagcatcaaatttctcctcatcatatcagtgtataaTAACACataaggtcatgagaattggggaaatgatcactaaagatgcattgtcttgatgtcttaacaagttgTTCTAATTACTACTCAATGAAATGTGTGGAGACGAGTAAGGAGATTTGAATAATGCCTGGGCTTAAAAAGGGTTAAGCAAAAACAATGTGCTGCTTTGCCTTGTTTTAGCTCAGCtcaaaaatgaatttaaaaaataccagtcagactgaatagttcaagccACTGACAGAAATGTTTTTCTGTCTGCCTTTTTTTTCCATAAAGTAGAAAACTAGAATACACTGGTCACCTATTTTGAAGaatctggactaaaccaaagttCCACACTGTAAAATCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12999 all species →	PRKCSH-like	Glucosidase II beta subunit-like	Family	Interproscan
PF13015 all species →	PRKCSH_1	Glucosidase II beta subunit-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028146 all species →	Domain	Glucosidase II beta subunit, N-terminal	Interproscan
IPR039794 all species →	Family	Glucosidase II beta subunit-like	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR009011 all species →	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR036607 all species →	Domain	Glucosidase 2 subunit beta-like	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR044865 all species →	Domain	MRH domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12630 all species →	N-LINKED OLIGOSACCHARIDE PROCESSING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006491 all species →	Biological Process	N-glycan processing	Interproscan
GO:0017177 all species →	Cellular Component	glucosidase II complex	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08288	PRKCSH; protein kinase C substrate 80K-H	-	Lectins	ko04091	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.