Detailed information of FUN_035351-T1 in Siderastrea siderea

Genomic Location: contig_39:4545667...4552243
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14939
all species →		DCAF15_WD40DDB1-and CUL4-substrate receptor 15, WD repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032734
all species →		DomainDDB1- and CUL4-associated factor 15, WD40 repeat-containing domainInterproscan
IPR047319
all species →		DomainDDB1- and CUL4-associated factor 15, C-terminal domainInterproscan
IPR038914
all species →		FamilyDDB1- and CUL4-associated factor 15Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR28541
all species →		DDB1- AND CUL4-ASSOCIATED FACTOR 15Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0080008
all species →		Cellular ComponentCul4-RING E3 ubiquitin ligase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11791DCAF15; DDB1- and CUL4-associated factor 15-Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_035351-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
58TPM > 0
7Conditions
287.6Max TPM
65.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 13 86.03 287.59
holobiont · low.pH Control.temp 20 13 56.94 163.17
holobiont · control.pH_high.temp 20 14 64.08 144.75
holobiont · control.pH Control.temp 19 12 75.31 214.91
Whole organism 4 4 2.34 3.73
unannotated 1 1 2.08 2.08
live coral tissue/skeleton 1 1 1.94 1.94

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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