Gene detail

Detailed information of FUN_035356-T1 in Acropora pulchra

Genomic Location: ptg000025l:6684050...6694617
NR annotation: XP_044179485.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114959041 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_035356-T1

ATGGCTTGCAGTAGGAATTTTTTCGACGATGTTAAGAAAGAACTTGAATGTTCAGTGTGCCAGGAACAGTTCAGCGATCTAAGGGAGCCGAAAATATTGAAATGTCTTCATACGTTCTGTAAGAGCTGTCTGATAGCATGGCTTCCGCGACAACAGCGCGAAGGCGAATTGAGTTGCCCAACGTGTCGACAGATTACGCAATGTTCTGCCAACGACATCAACAAGCTTCCATCTAACTTGTTTTGCAAGCAGTTGGTGGAAATAGTGGAGGCTTATAGCGGACAAGTGGGAGATGAAGATTCACCTCATTGCGGAGTCTGCGACGAAAAGAAGGCATTGAAATTTTATTGTATTGATTGCAATTGTTTCTTGTGTGGCGACTGCGCTGGTCTTCATGGCAAGGCTAAGGCTTTTAAAGGCCACGATATTAAAGAGATCTCAAACTTTAACTCAAATGATGTGCAAAAGTACGTTAGGCGAGCCAACGTTTGTAAGAAGCACGAAGATGAAGTAAGGTACTATTGCGAGAAATGCAACATTTGCATCTGTCGTGACTGTGCATTGTTGGAGCATTGTGATCACAAGAGATTATCCTTAGATCATGGACTCGATCTTAAAAAATCTGTCTTTACGAAAAGGATCGAAGAAGTTGAAGATGTTGGTCGTCGCTTGCAGGAACAGAAAGCCATTTTGGAAAAACAGAGAATAAGGTTTGGTACCAGCGTCGATCAATCGAAATTAGAAATTCATCGCGTCGCCGAGAACTGGATGAATGTAATTCGCAGACATGAAGAAGCCATGACGAAGGAATTACTGAAGCGAAAGGAAACCTTCGAAAATGAATTCTCGGCCAAAATGACCGACGTGAACGAAAAACTGACTAATATAAGAAACAGTTTGGAGTTTGGCAGAGACATTTTAGAACGTAACAACCTTCCAGAGATTTTAAACGTTGAAGAAACCCTTGACCGATGGTTTGAAGATTTTTTGTCATCTACCGAATTCAGTGGCCCGGTTGAGTTAAGTACTCTCTCGGCCAAATACGTTGCAAATGATACGTTCTTCTCTGAAAGTGAGTTGGGAAAGTTGGTTGACCCTATAATGGCCATTGTGCGAGGCAAAGGAGCGAAAGAGGTCCACCTGGACGAAGATTCCTCTTTCACGAAAAATTGGAATCACATCACATCACTGCGGCGTACCGATGAAGCCACGAAATCTAGGCAGTCAGACTTGAAAGATGGTTCGAATGTATATGACGAGCAAGTGGTTACATCAGTTCTTCAGGATAAGCAGAAAGTTGATGACGTGGCATTACCTGCAAAACCTTATTCCTTTGAGGATATTAAAGCAGAGGTGTTTGAAGTGGTATCTTCTGAACTTTGCCAGGACTATGTACAGTCTCTATCTCGTGACGAAATCAAGGGTCTCCTGCTGGAAATCGAGTCTAAAATCGGTTTGCGTTGGATTGAATCAGCTGAGAGCTTCGTGATATCGGGAACTCTCAGCCAAGTGGAAGAGGCACACAAGGTCTTGATGAAAGGAGTGTATTTAGTCAATGGGATCGAAGTGGTCAGTGATCAGGAAATCAACAATGGAGAGGCACCTGAACCGCAAGAAACAGGCCTAGCTCAAGCCAATGAAGACCAACGTGGCGTCAGGCAGAGGAATGTTAACCAAAAGCCGGCAAGACAACCTTTAGCCGGAGCAGGGCAAGCAAGTCCTTTACCAAACAGAACTAGAGACTCGGACAGCAATCAAGGGCCTTCTTCTGAATCCAATGCTATTGGAGTTCTGACGTTTGAGGTCCAGCCAAAGATTTTAGAAGTCCTTGGAGGGGCTCACAAGAAAGAACTGGATGACATCGAGACACAATGCAGGGTAGCAGTACCCAGAGCGGTCAAGGAAGGAAACCAGATCTCTCTGAAACCTTGTGATGGATGCAGTGCTGAGGATTACGGGAAGGCTTGTGATGCCTTTATTACTTTGTACCAGAAAACGTCCGAGATTTTCAAAGCAGAAAGGTTCTCCATAAGCAGCGGTCCAAGGAAGGTTAGCACCCGTGATGCAATTAGCAGAATGTCAAAAGAGGTCCCCGAAGTACTGATAGAGAGAAGCAAGGACCAAAAATACTGGGAGATGTATGGTGAGGTAGGTCATCTGCGGAAGGCCCTAAATTATCTCAAGACCACGGGCGTAGAAATTGAGATGAAATCGAAAGCCTTCAAGGATGGAAGTGATCTGGCAGGAAGAGTCAAATCTAAGGGCGATGAAAGAACTTTGGATGGAGATCAATCTAAAAATCCCAGGGGTTCCATAACATCAAGTGACCAGTTGGTGTTACATTATGGAGGAGTAAAGTTGTCAGTTTATAAAGGAGATATAACCAATGAACTGGCTGATGTTATTGTTAGCCCTTCAGAAAAGCACGTTAGTCATTCTGGAGGTATATCCAAAGCGATTGTTGACAAAGGAGGGAAAGCAATAGAGGATCAGTCTCGCAATCTCGTGCGAAAGCGCGGTGGATCTCTAAAAGGTGGTGAAGCAATATGGACAAAATCTGGGAAACTTCCTTGCAAATTTGTTGTTCATGTGGTTGGTCCAGATTGGGGCGCGCAGGGACTAACAAAGAGTCGAGAGATTCTTCATCGCGCTTGCCTCAGCAGTCTCCATGAAGCTGACAACCTTAAAGCGACGTCCATCGCACTACCAGCTATCGGTTCCGGCTATCTCGGAATGCCAAAAGACGTCTGCGCAGAAGTCATGTGTGAAACTGTTCGCGAGTACATTGAAAAGCGAAACACCTGGAAGAACACGATTACTGATATCAGATTTGTGAACAATGATGACGATTCATTGCACGCTTTTAGCAAGAAAGCCAGAATTCTATTTGGATATAACTTATCAGGGGATTCTTGGAGGGGAGGTTCGACTGCTTCTGCTCCATCTCGTTTTGGAGGGGATGGTTACGACGCAGATCTTGCGGGCTCCGATCACAAGCCACACGATCCTCGTTATAGCAAAGCGAGTTCACGCACGATTGGTAACCCCAGTCAGACGGTTACTCAGCATCCCCTTGGTCTGGATTCTTCAGATGATGCCAAGAATCAGTCTCCCAGTTCCTCCAGCCGTTCCTCATCTCATGGCACTTCATACAGTAATGCCTTGAAGAGAAAAACGTCTAGCAACGATGCCAGCTCGCTTAAAATACAGGAACCTGCATCCCCTAATGAGAGGAGAGACAAGGGGGACGAAGAATGCCCCATTTGTCTTAATTCCATTTCAAACCCTCGTTCATTGAACTGTAAGCACACATTCTGTTCGCATTGTCTCCAACAAGCCTTGGATATCCGCAACAAGTGTCCAGTGTGCCAGGAACCTCAGGGTGTTCTAAAGGGAAACCAGCCTCCAGGAGAGATGACCACTGAAACCAGACGAATGAGTCTTCCAGGTTATGAAGCACACGGCTGTATCATTATCAATTACCGTTTTCCGCCTGGTACTCAAGGCAAAGAGCATCCAAACCCCGGCCAATATTATGGAGGAACGTCCCGACGGGCTTATCTGCCGGATACACGCGAAGGGCGTGAGGTGTTACAGCTCCTGAGAAGAGCCTTCGATGCTCGCTTGGTCTTTACTGTTGGCACTTCAACCACATCAGGGCGTCAAAATCAAATAACTTGGAACGATATTCATCACAAGACTTCCATTGACGGAGGACCATATTCGTAA

Transcript

FUN_035356-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N9I9	Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens OX=9606 GN=DTX3 PE=1 SV=2
Q5REG4	Probable E3 ubiquitin-protein ligase DTX3 OS=Pongo abelii OX=9601 GN=DTX3 PE=2 SV=1
Q80V91	Probable E3 ubiquitin-protein ligase DTX3 OS=Mus musculus OX=10090 GN=Dtx3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001497 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01661 all species →	Macro	Macro domain	Domain	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF18102 all species →	DTC	Deltex C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR039398 all species →	Family	Deltex family	Interproscan
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039399 all species →	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR039396 all species →	Domain	Deltex, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622 all species →	DELTEX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_035356-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.