Detailed information of FUN_035357-T1 in Acropora pulchra

Genomic Location: ptg000025l:6697831...6741603
NR annotation: XP_044179487.1, E3 ubiquitin-protein ligase TRIM56-like isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8TDB6E3 ubiquitin-protein ligase DTX3L OS=Homo sapiens OX=9606 GN=DTX3L PE=1 SV=1
Q3UIR3E3 ubiquitin-protein ligase DTX3L OS=Mus musculus OX=10090 GN=Dtx3l PE=1 SV=1
Q8R3P2Probable E3 ubiquitin-protein ligase DTX2 OS=Mus musculus OX=10090 GN=Dtx2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001497 (this species only)
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity RING|U-box · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity|RBR · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923
all species →		zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00643
all species →		zf-B_boxB-box zinc fingerDomainInterproscan
PF13445
all species →		zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF18102
all species →		DTCDeltex C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039398
all species →		FamilyDeltex familyInterproscan
IPR039399
all species →		Homologous_superfamilyDeltex, C-terminal domain superfamilyInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR000315
all species →		DomainB-box-type zinc fingerInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR027370
all species →		DomainZinc finger, RING-type, eukaryoticInterproscan
IPR039396
all species →		DomainDeltex, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12622
all species →		DELTEX-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005654
all species →		Cellular ComponentnucleoplasmInterproscan
GO:0007219
all species →		Biological ProcessNotch signaling pathwayInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_035357-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP