Gene detail

Detailed information of FUN_035589-T1 in Siderastrea siderea

Genomic Location: contig_40:469707...475940
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02778 all species →	tRNA_int_endo_N	tRNA intron endonuclease, N-terminal domain	Domain	Interproscan
PF01974 all species →	tRNA_int_endo	tRNA intron endonuclease, catalytic C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006678 all species →	Domain	tRNA intron endonuclease, N-terminal	Interproscan
IPR006677 all species →	Domain	tRNA intron endonuclease, catalytic domain-like	Interproscan
IPR016589 all species →	Family	tRNA-splicing endonuclease, SEN2 subunit	Interproscan
IPR006676 all species →	Family	tRNA-splicing endonuclease	Interproscan
IPR011856 all species →	Homologous_superfamily	tRNA endonuclease-like domain superfamily	Interproscan
IPR036167 all species →	Homologous_superfamily	tRNA intron endonuclease, catalytic domain-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21227 all species →	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000213 all species →	Molecular Function	tRNA-intron endonuclease activity	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0000214 all species →	Cellular Component	tRNA-intron endonuclease complex	Interproscan
GO:0000379 all species →	Biological Process	tRNA-type intron splice site recognition and cleavage	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15322	TSEN2; tRNA-splicing endonuclease subunit Sen2	EC:4.6.1.16	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.