Detailed information of FUN_035810-T1 in Acropora pulchra

Genomic Location: ptg000025l:12020219...12036419
NR annotation: XP_044175290.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114961454 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O15943Neural-cadherin OS=Drosophila melanogaster OX=7227 GN=CadN PE=1 SV=2
B8V7Q1Protocadherin-like protein OS=Acropora millepora OX=45264 PE=1 SV=1
Q9VJB6Putative neural-cadherin 2 OS=Drosophila melanogaster OX=7227 GN=CadN2 PE=2 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000983 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02210
all species →		Laminin_G_2Laminin G domainDomainInterproscan
PF01049
all species →		CADH_Y-type_LIRCadherin, Y-type LIR-motifFamilyInterproscan
PF00028
all species →		CadherinCadherin domainDomainInterproscan
PF00008
all species →		EGFEGF-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002126
all species →		DomainCadherin-likeInterproscan
IPR020894
all species →		Conserved_siteCadherin conserved siteInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR001791
all species →		DomainLaminin G domainInterproscan
IPR000233
all species →		DomainCadherin, Y-type LIR-motifInterproscan
IPR015919
all species →		Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR027397
all species →		Homologous_superfamilyCatenin binding domain superfamilyInterproscan
IPR050174
all species →		FamilyProtocadherin/Cadherin-related Cell AdhesionInterproscan
IPR000152
all species →		PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24028
all species →		CADHERIN-87AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0007156
all species →		Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0007155
all species →		Biological Processcell adhesionInterproscan
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_035810-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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