Gene detail

Detailed information of FUN_035821-T2 in Siderastrea siderea

Genomic Location: contig_40:2763172...2787194
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_035821-T2

ATGTCTCCACACGGTGATGACATGGCAGACTCATCAGCTGAAGTGAAGAAGGAAGAGACTGTTGACACATCCGAAGGACAAATTCCTCAGACAGGGAACGACAAGAAAACTGCAGATACTGTTCCTGAGACTGGTCCAGTATCACCATCTTCTGTCCCACTGCCTTCAGCTCCGCCACCAGCATCTGCAAAAGCAGCAGCAAAAAAGACAGAGAATGGTGATGTGAAGTTGATGTCAGTGGCTAATCCTACGCCTGAACAACAACAGCTCCAGCAACAGGCACAACAGTAttaccatcaacaacaacagctCTATTACCAGCAGCAGTACTATGGAGGCTACAACCCCCAGCAACCTCAAGATCAACAGTACTCAAAACAGTTCACACAGGCTGGGCAAGAGCTGCCACAGACATCCCAGCCACAGCAGGATCAAGCCACACAACAGCAAGCTCCTAAAAAGGAAGATGAGCCAAAAAAGAAACGAAAGCGTCGTCACCGTGAGCCTTACTATTACGATGCAATGGACGATGACGAGAGTGAGAGCGAATCAGAATCTGACTCAGAACCTGAACCTGCTCCCCCTGGGGAAGAAATGTCACCAATGGAGACTGGGAAAGATGAAGAACTGTTGCCCCCAGGGGTGGAGGCCGAAGCACCAGGCATAGATGAGAATTTATTACCACCAGGGGTAGATGACCCCAAGACCAATCTGGTGGAAACAAGTGTGCAACTTCCAACAAGCTCATCAAATGCTGAAAAGCAATCCAGTACATCAGTACATGAAGACAAACCAGATTCTGGAGAACCTGCAGTAGGATCCAGTCAACCGGAGACCAGTACAAGCAGTAATGGTGAAGTGTCAGAAGGAGGATCAACTACTATGCTAAAAACTGCTGTTATACCAGAAACATCAGATGACACAGCTGCAGATTCAACTCAAGACCCACACACAAAAGAAACCAAGCAAACTTGCCAGCAGCCGGAGACAAGCAGCAGCCAAGAGCCGGCAGAGAGCAGCTCCTCTTCACAGGATAAAGACGCAGATCAAGTTGGCAGCACTGATAATGACATCAGTACAGCAACTACATGTAAACACCAGGATGTTGAAATGGTTCCTGAATCCAGCAACGAGGCACAGGAGAAGGAGGTGATACCTGTGGTGTCTTCCATGGAGGCGGAGCCATCCAGTGCTTCATCACAGGTGCAACCGGCTGAACAAGTATTTGAACAGaaaccacAAGAAGTTgattcaaacaaggcagaagaAGCAAAAGAAGACTCCAATAAACTTTCTGAAAAGAAAGAAGTTGTTGAAGAAACAAGTCCTGTTAAAGACGTCACAAAAGACAACAAAGAAAGCACAGTCGAGGAGAAAGAGAGGGACACGACAGAAGAAGGCGAGAGTGGTGAGATTTCCATCGCAGCAGGACCTCGTGCGCTTCACAAGACTTTCTCTCTGTTTATGAGGAGTGTTACCCCTAACATATCAAGAGCTGATATTGCTGCTGTATGTAAAAGATTTGCTGGATATCTTCGGGTAGCACTCTCTGATCCAAGCCCCGATAGAAAatTCTACAGACGAGGCTGGATTACGTTTGACCGAAGTGTGAACATAAAAGAAATTTGTTGGGATCTTAATAACATCAGGGTGAAAGACGTAGAGTTGAGTCCTGTTGTCAACAGGGACCTCTCTCGTCGAGTGCGATCCGTCTCTGGTGCCGCCACAGCAAAACAGGTCATCCGAGATGACATCAAACTCGCAGCTAAGCTGATCCGGGAACTTGACAAGAGAGCTGCACTGTACGAAAAGGAGAGCAAAGAGGAGACTGAGGCGAGAGAGAAGGCAGAGAAAGAAGCTGCTGAGaaaactgaggAGGGCGAAGAATGCGAGGCCAAACCAGCTAGCGACACAGAGATCCCAGACCTCCCCAGCGAAAACCCCATTCTAGCCTCGCTTTCAGAAGACGCGACTGAGGAGGAAGAAGGCGAGGAAATGGAGCTCATGGGGACAGCGTCGCCCTCACAGGGGGAGGCAGGGGACAAACCTGAGGTTGACTTATCACGTGACAGCAGTCTGTTGCGGGTATTGGACCGTTTGGTTCTGTATCTGAGAGTTGTTCATTCGCTGGATTATTATAATGGTTCGGATTATCCGTACGAGGATGAGATGCCAAACAGATGCGGGATTATTCATGTGCGAGGGGCGACTCCGGAGAAGTGTACGCTAGCTGAAGTTCAAGAATGGCAGAAGAGCTTAAACCAGAAGCTTGATCCGTTTTTACAAGAGAAAGTATCGCTAAAGGACGAGGAAATTGTTCAGCTCGGGAAAAAAGACCCTGAAGCTGAAACTGAGAAGTTTGTTGAAGCAAACACACAAGAGCTCGCTAAAGACAAGTGGCTCTGTCCGCTGAGTGGGAAGAAATTCCGTGGACCTGACTTTGTTCGCAAACACATCTTCAACAAACACATGGATAAAGTGGAAGCTGTTAGAATGGAGGCGGAATTTTTCAATAATTACTTATCAGATCCCAAACGGCCTCAATTACCCGAAGGACCTACACCACAGCGGCCGCCTGGGAACCAAATGGGTCAGGTGTATGGACATCAACACGCACAAGGCATGATGGGGTGGGGACCCAGGCCTCAAATGATGATGTACGGCCCCCGCGGTCCCTATACTCCGCCGAGCTATGGAGGGTATGGACACGATATGTACAGCAGAGGACACACTTTCCCGCCAAAACCACGAAGATTTGGGTACGGTGGTGGAGGAAGAAATAAATCAAGCGACAGGGGATTCCACCGCGATCCAAGGCAGATTGTCCAGTACAAAGACTTAGATGCGCCGGACGATGCTGACTTCTTGTAA

Transcript

FUN_035821-T2

CATctttgttcttatttttcttgcagATCACGGGAATTCGTTCGCGGTTATTTCTCCTTGTAAACCTTTACTATGGGAGACAGTGACGACGAATACGACAGAAGACGAGCAAGAGATAAATTCCGCCGAGAAAGGAGTGATTACACCGATCGAAGACGAGATCGGGATGATAGAAGTTCCCGACGAGATGAATGGTCCGACAGACGGCGGGAGCCATCTTGGGAAAATAGACGGCGCGGAGATTATAGAGATTTCGATCGAGGGAGAAGAGATAGCGCTGGGAGACACCATGAAATGAGCCCTCCCATGAAAAGAGTTCGAAGAGATTGgGATGAGCCATACCATAACACTGGGGAATACAATGTACCTTACGGAGGAGTAGCGGCACATCATAACACCTGGCCTCACCCAGATGTACAGCAGATGCAAGCGTCTCAGCAGGATGCTCGACAACAACAGAGACCTGATGTGGAACAACAGCCACAGGCACCACAAGGAAATCATGGCCCCGCTATGATGACGTTTAAGCAGTTCTTAAATGCTCAAGATGACAATATCGGAGATGAGGAAGCCTTCAAGAAGTACCAAGAATACAAACTGGAGTTCAGGAAAACTCAAATGAGTGATTTTTTCCTGCAACACAAGGAAGAAGAGTGGTATGTATATTTGGTTCAAAATTTTAATTAGCAATTGCATGCATACTACCCCAGGAACTTTGTGTTGGAAAGGGCATTCCTGAGGGGATCAACACAGGGGTTTATAGTCTTTGTGCATGAACTGTGTGGCAGTCTAAAAGTCAACATAATACATTGGGCAGCATGCAGAAATAACTGTGCACATTAATGGATTGGGTACCAGTGAGATGGGCAAACATTCTGTACTTATATTAGGGGACTATTTTTAGGGGTAGTGTGTGTTCAAATTATTTGATATTAATAAAAATGTGCAAATGATTGTAAAGGATAATGATGTCCTAGCACTCTAGGAAGTGCAAGTTTATTTGTGAATTATTGACACTGAAACGGTACTCTCAAACGTGAAATTTCTTCCTTTGTCGCTAAACACATTGCTAAAAGGTACACAAATACACAGATAAGTGGCTTTATTTAAGAGACTGATTATGCTCCCAGTATACAGTTACCTATGTTAATATCGTCAGGTATTATAATGTTGTTTTACATTTCTGCAAGCCATATTATTGCAACTTGCACTaagtttttatttgtttgagaCATACTTTTGCTGACTTTTAATGGCTTGTATTTCCATGGATCGATCAAATCCAGTAGTAACTTGAATGTTTTCAACTCCTCCTCAAACTGATCAAAAACTCTGTGCAACTTTCAAGAGTTTGGTGCATACAACTATTAAAAGTAAAAGTAAtctgttgttatttttatgGTTCTTTTTCTAACTAGTTAATGGCCCTTTCCTTTCGCAGCAAGCTGTATTGTTGTTCAATCAGACACATGCATGAGATTCAAAGCCATATTGGGACCTTAAAGCATCGCATTTTAACCCAACCTCGGTTTTTATTGCATGAGGCTTAAAGCCTAGAAACTCTGCTCATGAAATCAACCAACGTACTGCACAACGCAGTAGGCATTAGATTGTTATCACTGATCAAGAGCCACGTTTCATTCCCGCGATTCAATGTTGAGGTTCATTTTCGTCTAATCTGACCTCACTTCGTCACTTTCGCAAACATGCTATAGAAATAGCAAATGGtttaaaaagtcaaaaataCGAATGTATCGCAGCGGATTCAAGGAAACACAACACAGGTGAATGAGTAAGTCCACAAGGGTGATGatacctttttttattttttcctatCTCTCTTGCCACCTTCCATGCTAACCGtgacttgtttttgtcttattttcaaGGTTCAGAGCTAAGTACCACCCAAAAGATGCAGCAGCTCGCcaaaaagaattcaaaaaagcaatgAAACGGCGACTGTCTGTCTTcctgaacttgttgaaatcagGAAGGGCTGATGGTTTGTCATTGGACGTTGATAATTCTGATGCCATTATAAAATTTCTTGATGCAGGTaaaaaagatataaaaaataaataaatgtaattttGAGTAGTAAATCCATAGCCCAATCCAGATTTGTGaaaaccacaaaacaaaataaaaatttacaatgtaaaagaaaaaaaaacaaaaattacgcTAACACTAAGGTATACTTCTGTACATATAGCTTCAAATGACAATGTAACCCAATTAAAAGAcattcgcgccaattgtttgtgcgcatccttactgcccACATAATTCACGTcacaatgtcatgccacgtcacgCATTGAATGCATGTGCTGACTAAGAAATAGTATTATATAGACAAATGTACAGTGGTGGTGGGTGTTTTTATATCCATAAACGTGCTTtactctcttaaatgcacggtgaTCCCATACTTTTTTTGATAAATCATTTCCTTTACTGGATCTGTGCATtttgtcgtaaaactaaaaaaaatctgaacgtgagAATCAAATATgatcgaatttttctacgaaTACAGGTATACGTGACTTACAATTATCCTTCTgggaggctaattttacctgaagaaatGATATTACCTGCAAAAATATACTAAATAGGTCTATTTGCGatgaaatcaataaatcagcattatctagagtcctccacgtaacttatcttattccttgtagcaagaaagccgatttcgccttACATAGCCAAAGCTTCTAAAAACACAACGTTTGCGATACGCTGTTTCTCCAAAACGAGCAGGGTGACCCCCcagttttttgcttttctgacaagagttggtcattatctaactgcaataaaagtttggaaaaaatctgaacatGGGAAGATTTTGGGCATGAACATCCTTAATATAACAGATGGTGAAAGAATGTAATTATTGTTGACAGTAATACACAATGACAGTTAAAGTCACATAAAGAAAACACAAGTTAAATAGCCATTTTGTTGTGCAGACACTCCAAGCATGAATAGTTAGTGCCTTTTTTAGACATTGCGACAAAAGCTGTTCAATGACCAGTGTCCcccaaaaaatgaaatttacattttttaagtGATCTTCAATCATGAAACAGGTATAAAATTAATAAGATAGTGCATAAATTGGGTGCTTCAAAAAAAGGTCCTCAAAGATAAAGTACTCTTCACTGTTCATGTTTGGAGAATCTGTACAATAACGTTTGGAACCCAAAATTTCTGGACAACAGCAAAAGGCCTGCTTGGCTGAATTGCTTGAGATAGGAACCATAAATCACTAAAAATGTGGCAAACCTGCTGGGAAACAGACAGATATCACACATGGATGTCACACAAAAATGTCTTTGAAATGAGAATGAACCAAGAGCTTGATCTCAAAATTTGTTGTTATTCAATGCAtttcatttaaccctttaatctcCTCTTCTCCATACATTAAATCTTTTATGGTACTACTTGGGAGAATTCCCATACACATCAAGACATCTCACATCAggtgatcacttccttaattctcatgacctgtatgcaTGATCAAGTtatgatattgtgaggagaaattagatgattGTAACTactggggcttgaagggttaattCTCCAGTGCATTTTTATCAGTGATAATCAcagtgccttttttttttgtttttgtttttgtttagttgtcATCAAGTTAGAAGGAGGAACAGACAGTGATCTGGTTGTGTTGGACCGCCCACCCTCTCCCACTCCAGAAAGACGGCGTTCATCGTCGAACCCCTTGATGTCTCCACACGGTGATGACATGGCAGACTCATCAGCTGAAGTGAAGAAGGAAGAGACTGTTGACACATCCGAAGGACAAATTCCTCAGACAGGGAACGACAAGAAAACTGCAGATACTGTTCCTGAGACTGGTCCAGTATCACCATCTTCTGTCCCACTGCCTTCAGCTCCGCCACCAGCATCTGCAAAAGCAGCAGCAAAAAAGACAGAGAATGGTGATGTGAAGTTGATGTCAGTGGCTAATCCTACGCCTGAACAACAACAGCTCCAGCAACAGGCACAACAGTAttaccatcaacaacaacagctCTATTACCAGCAGCAGTACTATGGAGGCTACAACCCCCAGCAACCTCAAGATCAACAGTACTCAAAACAGTTCACACAGGCTGGGCAAGAGCTGCCACAGACATCCCAGCCACAGCAGGATCAAGCCACACAACAGCAAGCTCCTAAAAAGGAAGATGAGCCAAAAAAGAAACGAAAGCGTCGTCACCGTGAGCCTTACTATTACGATGCAATGGACGATGACGAGAGTGAGAGCGAATCAGAATCTGACTCAGAACCTGAACCTGCTCCCCCTGGGGAAGAAATGTCACCAATGGAGACTGGGAAAGATGAAGAACTGTTGCCCCCAGGGGTGGAGGCCGAAGCACCAGGCATAGATGAGAATTTATTACCACCAGGGGTAGATGACCCCAAGACCAATCTGGTGGAAACAAGTGTGCAACTTCCAACAAGCTCATCAAATGCTGAAAAGCAATCCAGTACATCAGTACATGAAGACAAACCAGATTCTGGAGAACCTGCAGTAGGATCCAGTCAACCGGAGACCAGTACAAGCAGTAATGGTGAAGTGTCAGAAGGAGGATCAACTACTATGCTAAAAACTGCTGTTATACCAGAAACATCAGATGACACAGCTGCAGATTCAACTCAAGACCCACACACAAAAGAAACCAAGCAAACTTGCCAGCAGCCGGAGACAAGCAGCAGCCAAGAGCCGGCAGAGAGCAGCTCCTCTTCACAGGATAAAGACGCAGATCAAGTTGGCAGCACTGATAATGACATCAGTACAGCAACTACATGTAAACACCAGGATGTTGAAATGGTTCCTGAATCCAGCAACGAGGCACAGGAGAAGGAGGTGATACCTGTGGTGTCTTCCATGGAGGCGGAGCCATCCAGTGCTTCATCACAGGTGCAACCGGCTGAACAAGTATTTGAACAGaaaccacAAGAAGTTgattcaaacaaggcagaagaAGCAAAAGAAGACTCCAATAAACTTTCTGAAAAGAAAGAAGTTGTTGAAGAAACAAGTCCTGTTAAAGACGTCACAAAAGACAACAAAGAAAGCACAGTCGAGGAGAAAGAGAGGGACACGACAGAAGAAGGCGAGAGTGGTGAGATTTCCATCGCAGCAGGACCTCGTGCGCTTCACAAGACTTTCTCTCTGTTTATGAGGAGTGTTACCCCTAACATATCAAGAGCTGATATTGCTGCTGTATGTAAAAGATTTGCTGGATATCTTCGGGTAGCACTCTCTGATCCAAGCCCCGATAGAAAatTCTACAGACGAGGCTGGATTACGTTTGACCGAAGTGTGAACATAAAAGAAATTTGTTGGGATCTTAATAACATCAGGGTGAAAGACGTAGAGTTGAGTCCTGTTGTCAACAGGGACCTCTCTCGTCGAGTGCGATCCGTCTCTGGTGCCGCCACAGCAAAACAGGTCATCCGAGATGACATCAAACTCGCAGCTAAGCTGATCCGGGAACTTGACAAGAGAGCTGCACTGTACGAAAAGGAGAGCAAAGAGGAGACTGAGGCGAGAGAGAAGGCAGAGAAAGAAGCTGCTGAGaaaactgaggAGGGCGAAGAATGCGAGGCCAAACCAGCTAGCGACACAGAGATCCCAGACCTCCCCAGCGAAAACCCCATTCTAGCCTCGCTTTCAGAAGACGCGACTGAGGAGGAAGAAGGCGAGGAAATGGAGCTCATGGGGACAGCGTCGCCCTCACAGGGGGAGGCAGGGGACAAACCTGAGGTTGACTTATCACGTGACAGCAGTCTGTTGCGGGTATTGGACCGTTTGGTTCTGTATCTGAGAGTTGTTCATTCGCTGGATTATTATAATGGTTCGGATTATCCGTACGAGGATGAGATGCCAAACAGATGCGGGATTATTCATGTGCGAGGGGCGACTCCGGAGAAGTGTACGCTAGCTGAAGTTCAAGAATGGCAGAAGAGCTTAAACCAGAAGCTTGATCCGTTTTTACAAGAGAAAGTATCGCTAAAGGACGAGGAAATTGTTCAGCTCGGGAAAAAAGACCCTGAAGCTGAAACTGAGAAGTTTGTTGAAGCAAACACACAAGAGCTCGCTAAAGACAAGTGGCTCTGTCCGCTGAGTGGGAAGAAATTCCGTGGACCTGACTTTGTTCGCAAACACATCTTCAACAAACACATGGATAAAGTGGAAGCTGTTAGAATGGAGGCGGAATTTTTCAATAATTACTTATCAGATCCCAAACGGCCTCAATTACCCGAAGGACCTACACCACAGCGGCCGCCTGGGAACCAAATGGGTCAGGTGTATGGACATCAACACGCACAAGGCATGATGGGGTGGGGACCCAGGCCTCAAATGATGATGTACGGCCCCCGCGGTCCCTATACTCCGCCGAGCTATGGAGGGTATGGACACGATATGTACAGCAGAGGACACACTTTCCCGCCAAAACCACGAAGATTTGGGTACGGTGGTGGAGGAAGAAATAAATCAAGCGACAGGGGATTCCACCGCGATCCAAGGCAGATTGTCCAGTACAAAGACTTAGATGCGCCGGACGATGCTGACTTCTTGTAAATAAACGTAGCAATTAGATCGATAAACAGGAGCAGTTACTCTTGTCTCGCGTGGGTTGTCAAGCGAGACAGGAAGCATGCGCGCGTGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04959 all species →	ARS2	Arsenite-resistance protein 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039727 all species →	Family	SERRATE/Ars2	Interproscan
IPR007042 all species →	Domain	SERRATE/Ars2 , C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13165 all species →	ARSENITE-RESISTANCE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0031053 all species →	Biological Process	primary miRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27103	SRRT, ARS2; serrate RNA effector molecule	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.