Gene detail

Detailed information of FUN_035827-T2 in Acropora pulchra

Genomic Location: ptg000025l:12174772...12184110
NR annotation: XP_044175763.1, LOW QUALITY PROTEIN: nucleolar protein 9-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_035827-T2

ATGAAGAATAGAAGGACTCGAAAGCAACTCAAAGTAGCTTCTTCTTTGCTTGATGAGCAAACCCTTGGTTACTTCGAGAGGGTGGAAAATGTGATAAATGACGACGATTTTGAGGACGAAGAAAGTCGAGAACTCTTTGTTGAGAACGTTTTCTCGCAAATAGAAAACAACGAAATCAAGCTCTTCTGTGACCGAACCATAAGTAGAACTATGGAGAAGCTTTCGCTATATTTCAGTGATATCCAAGTGCGAAAAATATTACAAAACATTGAAGAACATTACTCAAAAGTTGCGATGGATAAATGTGGAAGTCACGTGCTTCAAACACTCGTTTGTGTTATACCAAAGGCAATCAGATCAGAAAGAAGTTATCAAAGAAAAGTTTCAGAAGAAGATAAAAATGTAAAAGGTACAGAGGAGCTGTTTTTGAGCCTCTGTAGCCGCCTCCAAGAGGACTTTTCAAAACTCGCCGATCACGTGAATGGAAGCCATGTTGTTAGAGCTGTATTTGAAGTGTTGGGTGGTGTGAAGTTGTCAGATCAGGTTATTCGCAGCAGAGCATCGCATCAATCTAGAGAAAGATATAGTCACTCAGTAAAGAAGGGAGCATCTGCTGCACAGAGTCAAGTCGGGACTGCCTTTGAAAGTAATATTTTGAAGCCTATAGAGACAGTAGCAATCCCTGAGAGCTTCTCTCCCATTCTCAAGCATTTCACAGAGATGGTTATTAAAATGGATCTGCAGAAGCTAGTTCTTCATCCAGTCAGCAATCCTCTTCTACAGACACTGCTCTTGGTTTTGCACACAAAGAATCAGTCACTGTGTAAAAAGTTGTGCAAGGCAGTTATGTCCCAGATTGACATGTTTAGCAGCAAAGTTGAGGAAAGCCCCTCACAAAAGAGACCTAAAAATGATGCTGCAGAGGAGAATCAAGGCAATGAAGAGGAAAGCAACTACAGAGTTCCTATCTTATTTTCTAACGAAATAAGCAGTTACATGATTGAGAAGATCCTTCTTGTTGTTTCACCCAAGCTGTGGCAGAAGATTTATGATTCTTATTTTGAAAGTCATTTGCCTCAGTTGGGCCAGCATCCTGTGGCTAACTTTGTTGTGCAATATCTCATGGCAAGCATCACTGACAAGTCACAGGCTAACCAGGTGATTGTAGAGTTGCTGCCATATATAGAGGACTTTCTCATGCTTGGTCACGTGGGAGTTGTGGCTAGAATGGCCGAGACTGTGGCACGATTTCAGATAAAACAAAAGAAATTCTTAAAAGCTCTGTTGAATGCATTCCATTGTAAAGAAAAAACAAAACGATCCAGTGCTGTTGTTCTGATATCTTCATTGACAACCCATGAGGTGTTCTTTGGATTAAGGCCTGAAGAGCAAAATGTTCTTGAAGAGGACAACAGCAACAATGAGGCAGTTTCCAACGATGCAAAACTAAAATCTGTTAACTACCACGGTGTCCTGATTCTAAAGGCATTGTTTGACTTCCAAGATACAAACAAGATAGTTTCAAGCTTTCTGAGCCTGTCTTTGGAGGATGTAATGATTCTTGCAAATGACCCGGTGGGTTCCTATGCAGTTGAAGCTTTCCTGAAGAGCAGATCGGTGACAAATGAGCAAAAACATATGTTCATTGAAAAGATGAAGGGAACCTATTCAAAGCTTTCTTGCGTGAAAGGGGGATCCCGTGTCGTAGAAGCATGCTGGAGAAACGCGGAAGTGAATTACAAGAAAGCCATCACAGAGGAACTGGCACAAAGCGAACAGCAGTTGAAAGCCAACTTTTACGGCAAATTTGTGTTAAGAAATTGCGGTGTTGAGCATTTTAAAAGGAAGGACAAGTCATGGCATGAACAGGAACAGAGAACTGCAAAGAAAATGAAACTGCTTGAAGATATTTTAGAGGAGCGAGTTGATGAAGCAGTGGCTGACAACAACTCAAAGCCGAAGGCGCAAACTGGATTCAAACAGCTTGCTCCACAGATGGCCGCCTTAGGCTTTACGTGGAGTGGAAAACGAGCGCATAATTTCAAAACGGTGAGGTCTTACTGA

Transcript

FUN_035827-T2

TGGGTTGAACATGGCGGACGATCTTAACAGAGTATTGTAAAAGTTCCAAGGTTATATAGGGAATTGAAATGAAGAATAGAAGGACTCGAAAGCAACTCAAAGTAGCTTCTTCTTTGCTTGATGAGCAAACCCTTGGTTACTTCGAGAGGGTGGAAAATGTGATAAATGACGACGATTTTGAGGACGAAGAAAGTCGAGAACTCTTTGTTGAGAACGTTTTCTCGCAAATAGAAAACAACGAAATCAAGCTCTTCTGTGACCGAACCATAAGTAGAACTATGGAGAAGCTTTCGCTATATTTCAGTGATATCCAAGTGCGAAAAATATTACAAAACATTGAAGAACATTACTCAAAAGTTGCGATGGATAAATGTGGAAGTCACGTGCTTCAAACACTCGTTTGTGTTATACCAAAGGCAATCAGATCAGAAAGAAGTTATCAAAGAAAAGTTTCAGAAGAAGATAAAAATGTAAAAGGTACAGAGGAGCTGTTTTTGAGCCTCTGTAGCCGCCTCCAAGAGGACTTTTCAAAACTCGCCGATCACGTGAATGGAAGCCATGTTGTTAGAGCTGTATTTGAAGTGTTGGGTGGTGTGAAGTTGTCAGATCAGGTTATTCGCAGCAGAGCATCGCATCAATCTAGAGAAAGATATAGTCACTCAGTAAAGAAGGGAGCATCTGCTGCACAGAGTCAAGTCGGGACTGCCTTTGAAAGTAATATTTTGAAGCCTATAGAGACAGTAGCAATCCCTGAGAGCTTCTCTCCCATTCTCAAGCATTTCACAGAGATGGTTATTAAAATGGATCTGCAGAAGCTAGTTCTTCATCCAGTCAGCAATCCTCTTCTACAGACACTGCTCTTGGTTTTGCACACAAAGAATCAGTCACTGTGTAAAAAGTTGTGCAAGGCAGTTATGTCCCAGATTGACATGTTTAGCAGCAAAGTTGAGGAAAGCCCCTCACAAAAGAGACCTAAAAATGATGCTGCAGAGGAGAATCAAGGCAATGAAGAGGAAAGCAACTACAGAGTTCCTATCTTATTTTCTAACGAAATAAGCAGTTACATGATTGAGAAGATCCTTCTTGTTGTTTCACCCAAGCTGTGGCAGAAGATTTATGATTCTTATTTTGAAAGTCATTTGCCTCAGTTGGGCCAGCATCCTGTGGCTAACTTTGTTGTGCAATATCTCATGGCAAGCATCACTGACAAGTCACAGGCTAACCAGGTGATTGTAGAGTTGCTGCCATATATAGAGGACTTTCTCATGCTTGGTCACGTGGGAGTTGTGGCTAGAATGGCCGAGACTGTGGCACGATTTCAGATAAAACAAAAGAAATTCTTAAAAGCTCTGTTGAATGCATTCCATTGTAAAGAAAAAACAAAACGATCCAGTGCTGTTGTTCTGATATCTTCATTGACAACCCATGAGGTGTTCTTTGGATTAAGGCCTGAAGAGCAAAATGTTCTTGAAGAGGACAACAGCAACAATGAGGCAGTTTCCAACGATGCAAAACTAAAATCTGTTAACTACCACGGTGTCCTGATTCTAAAGGCATTGTTTGACTTCCAAGATACAAACAAGATAGTTTCAAGCTTTCTGAGCCTGTCTTTGGAGGATGTAATGATTCTTGCAAATGACCCGGTGGGTTCCTATGCAGTTGAAGCTTTCCTGAAGAGCAGATCGGTGACAAATGAGCAAAAACATATGTTCATTGAAAAGATGAAGGGAACCTATTCAAAGCTTTCTTGCGTGAAAGGGGGATCCCGTGTCGTAGAAGCATGCTGGAGAAACGCGGAAGTGAATTACAAGAAAGCCATCACAGAGGAACTGGCACAAAGCGAACAGCAGTTGAAAGCCAACTTTTACGGCAAATTTGTGTTAAGAAATTGCGGTGTTGAGCATTTTAAAAGGAAGGACAAGTCATGGCATGAACAGGAACAGAGAACTGCAAAGAAAATGAAACTGCTTGAAGATATTTTAGAGGAGCGAGTTGATGAAGCAGTGGCTGACAACAACTCAAAGCCGAAGGCGCAAACTGGATTCAAACAGCTTGCTCCACAGATGGCCGCCTTAGGCTTTACGTGGAGTGGAAAACGAGCGCATAATTTCAAAACGGTGAGGTCTTACTGAGAGAATAAAACTGTTTTAAGGCTCAAGTTCATCCAAAAGACATTTCACACTTGTGTTTGTTTTGAAATAGTTGCAGCATTATGATCGGGTGATTTTCGTATTTCCCGTCTGTGCAAAATTTAATGCAGCACGCATGAGCCTTTAACTCTAGAGGATTTTCAACTAGATTTGCAACCTTCAGTTTTGTCCTGGACTTGAGAAAGAAATTGAAGCCTCTGGTTAATAGGAGCGATGAAAGTATAACCAAGCCAAGCCAAGCCTAAGCTCAGCCACAACTTCTGTGATAAATCTTTGAAACACTCCTGGAGAAGAGCAAGTAATTCACATCCTTGCTGCGGACGACGTAAACTTCTTCCTCCTCTCCCCACCCCCCCCCTCCCCTCGCCCTTTACTCAGTTTTTTCATTTACAGCTAGGTTTTCCACGTTGAATAGTCAACATGGAAGGGGAGGAGTGGAATGCACGTACCCTCTTACAGCATTTGTGACTTTAGATAACTCAACAACCATCATTCCATCGTAACTTCTAAAAAGCGGTGGAAAGTTGATTTACGTGTTTTCTCGCCAGGACAATCACAGTCGTCAAATGGAATTCCCCGAGGAAACCCAGAAAAGAGCCAGTGAGTTTAAACTCAAAGATAATGAGTTTGACAAGTGCGCAAGTCTTGGTTCAAACAAAACACATGATCTGTGTGATGAGATGGAATTCATCGCCGAAGCAGTGAAAGCCTCAAAATCAGTTAAAAAGTCGGAGAGAAAAAAGAAGAAGAAGAAGCCGAAGTAACTCGCTGTTTGTCGTATTCACAGCCCCTATGAAGGAGAAATTCGGAACGCCCTCATTATCCCCATCGTCACCTTTTTTTTCCCAGGCTCGACACTCAGATATCAGAACCTTTTTAGGGGAAAACCATTCAAATCGATTATTAAAACTTTTACCTTACCTCATTTGCAAGGTTTCTTGTTCTCTGCGCGAATTTACAACCAATGAAAGGGACTTGATGAGTTTCCACTGTTTATACTTAAACATCTGCGTGCAGTGTTAATAATCAGGCCACAGTTATTGAAAGGTTGGATAGAGCTGACGAGGGGATTAAACACTATCCATTGAAAACGTACTTCAAAAATCTATTGAGTTATCCAATGGATGCAATTTATCTTACGAATAGTGCTATCCATCCTTTGAACGATGTTGCTGTTAGAAGGCTGTAATTGTTTCTAAAGGTCCACAAGTGAACAAAGTGATGAAACGTTATCTTTTTTGAAAGAAATTCTTCTAATGTTGAATCATGTTGCAAATGGTGCAAAGCGGAGTCAGACCCTTTGTAAAACTAACATCAACTTATTCTGTAGAGCTGACAGTAACCTTAGGTCAGGGATTTGATAGTATTCCCGAAAAAGAAGAGACAAAAAACGAAAGTAGACAAGATAAGGGGGATTTTAAGGTATTCTCTATCTTTTAAAATGGCTTGTTAATTGGTCCAGAGTCCATTTTCTAGAGTAGGGTGCAGAAAATTAGTACCACCTGTCTGAGGGGCAAAAAATTAAGTCACCATTGAAGAAATGCTCCTTTATTCAAATACTCCTTTGGGGAATCAACAAAGGCATCTGGTGCTCTGATGAATTAAATCCTTGATCAAAGGCAATAGCAACAATGTATAGGTATTTGTCATGGCTTCTATACGTAATTGCTTAAATTGCGTTCATAACTGTGATGATCATAGCTCACTTGATTTCAAATCCGCTGTTCAATATATGAAACATTTCATATATCACTTCACATAAGTAGTTTATTATATGGCACTCTGTGATGCCTGGTTCAGTTGCTGATTCAAAAGTTTCCAGATCTTTAGGATAATAAAACACGCTTGGAGAAGGTTCGTCTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B6H3T4	Nucleolar protein 9 OS=Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255) OX=500485 GN=nop9 PE=3 SV=1
Q0U154	Nucleolar protein 9 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=NOP9 PE=3 SV=1
C7YQ16	Nucleolar protein 9 OS=Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4) OX=660122 GN=NOP9 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006296 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00806 all species →	PUF	Pumilio-family RNA binding repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR040000 all species →	Family	Nucleolar protein 9	Interproscan
IPR001313 all species →	Repeat	Pumilio RNA-binding repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13102 all species →	NUCLEOLAR PROTEIN 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000056 all species →	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0000447 all species →	Biological Process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000472 all species →	Biological Process	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000480 all species →	Biological Process	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14790	NOP9; nucleolar protein 9	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.