Gene detail

Detailed information of FUN_035853-T1 in Acropora pulchra

Genomic Location: ptg000025l:12549998...12554986
NR annotation: XP_044169053.1, ATP-dependent RNA helicase DBP7-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_035853-T1

CACATGTCACCGCTCTATTACGCGGTTGCTAAGTAAACGTGGACTATCAAGATGGCCGTAGTGTCTTTGTTCCGTCGAACGTTTTCCAACAGGGCATTTTGTTTCAAGAAAGTTAAAAGGCGGATGTTTCATACCTTTCGGCTGAAAGATATCTTAATAAAGAGACTTAAAGATATTAATATTTCGAACCCGACACCTATTCAAGAAAAGGCACTCAGACCAGTGTTGGAAGGAAAGGACACCATAATCAATGCTGAAACAGGAAGTGGAAAAACTCTTTGTTATTTGCTTCCCATAATCAACAAACTTCTTTCCAATGATAATATTCTTTCAAGACCACCATATGCTGTTGTACTCTTGCCAAGTATTGAACTCTGTAATCAGGTAGCCAGTGTGTTCCAAAGTCTGACAGACCACACAATGGCGCCCTGTCTCGTCCACAAAGAATCCAAACTTTTCGTTAATCGCAAGTATCCTATAATAATTGCTACGCCTGATTCCTTGTTTAACTATGGGCTGAGTTCCCTGAATAATGTTCAAGTTATGGTCACTGATGAAGCAGACTTTCTAATAACTGGTGGAGGAGACGTAGTGTGGGAAATCCTGAGTTTTTTCAAGGGTGTCGATAGTTTGAAGACTAAAAGAAGACAAAGACACTTAGCAAGGCGACAGAAAGTTTCAAGGGAACCCAATGCTGTACAAGGCAGCATCGAGTCATTTGACCCTAACAAGCAAAAGGGCAAAAAAGCAGCAAGTGCAACACCTGATTGTCACAATGAGTTGCTACATGCACCAATATCAGCTCCCAAAAGACAATTTGTTTTTGTGGCTGCAACACTGCCACGTCATGGTCCCAAAGCTGCTTTCAATGTACTGAAGGAATGGATTCCAGAAGCACGGCTTGTATCCACAGATTTAGCCCACCATCCTGTACCCAATGTGGGTATATCTTACATGAGAGTCCATGAGGCAAATAAATTGCCTATGTTGCTACTTTGTCTCAATGTTCTTGCAGGAGTTATGAAAAATCCTCTGAAAAATTATGGAATGAAAATTAGCATAGATGGTGAGGAAACTGTTGGTTCTAACTCTGTCATCTTGACAAGAGAAGAACTTGATGTGCCCACCTCACACCAATATCAGTCAGACAGAAATGATGCATCTTTCCTTGAATGTGTTGGCTTGACAAATCTACGGGTTTTGGTTTTTGCAAATTCATGGAAAATGGCTGAACAAGCATTTAATTTCCTAAGGGATGTGAGAGAAACAGATGGAAATGATATTATTGTTTGGAAGCCTCAGAATGATGTGACAACAACAAAGTGTGGAGAAAAAACTGATTGTGATGTTGTTCATTCAGGCACGGCAAGCAGCTTTTTTGAAAAAATTGGAGACCAAGATATCTGGAAAGGAAGGGTTGGGTTGATCCACAAGAAACTCTCTGTTAATGAGAGAGTTGAGAACTTAGACAAGTTTAAGTCAGGACAACTGAAGGTTTTGATATGCACTGATCTGGGGTCACGTGGTTTGGATATTCCCGAGGTAACTCATGTCATTCAGTTGGACTTTGCCCCAAATGCTACTGCAGTGCTGCATAGAACAGGGCGAACAGCCAGGGCAGGTTCATCTGGGAAAGTGATCAATTTTGTCACGGAACAGGATGAAGATTTAGCCAAGGCTATCCAAAATTGTGCAGGCAGCCCTAGCAATAATAGCTATGAATCTCATTTCAGTCGGAACCGTCAGTTCAGATGGCGACTGAAAAAGAAACAACTGAGAAAAATGAATAGACAAACCACAGAGGGTTTTGCCTCTGTTTCTGATTGATTCAAGAAGCTATCAGAAGAAAAATTAACATGGCACCTTCAAGGCAAACGCGCTGTAACAGCTATCATCCTGACACACTTTTTAGACACAGTCTTGAAAACACGAGAACCTCAACTGGAAGGTAAAAGCTATGAAATGTCGTAAAGTTTATTCAAATTGAAAGGATAGTGCCATAGATGATGACAATGCCAGTTGTGGATGCTGATAAATAACTTTTGCAAATATCCTATTCTGTTTACATTGGAAAAAGTTGATGAAGTAACTGAATTTTGAAGTGAATGTAATGAAAATAATAGTATTTGTTGTACACAAGCTCAGCTGTGCTAGCAATCTCACATCTTAGTTTTGCACAGATTTTCCCAGGCTGGCACGCATGCTGCATGTCCAGAAGGCTTTTTATATGTAAACCTGATCTTTGATAATGCTGTAGTGGTTTCTTAAGGTACACATTTACCACAAGTGAACAAACTGGTGAAACGTTATTTTTTTTAAAAGAAATTCTACTAATGTTGAATCATGTTGCAAATGGTGCAAAGAGGAGACCCTTTGTAAACCTAAGATCAACTTATTCTGTAGAGCTGACAGAAACCTTAGGTCAGGGATTTGATAGTATTCCCGAAGAAAAGAAGAGACGAAAAACGAAGGTAGACAAGATAAGGGGGATTTAAGGGTATTCTCTATCTTTTAAAATGGCTTGTTAATTGGTCCAGAGTCTACATTTTGTACAGTAGAGTGCAGAAAATTATTACCACCCTGTCTGAGGGGCAGAAAATTAAGTCGCCATTGAAGATATGCTCTTTTATTCAAATACTCGTTTGGGGAATCAACAAAGGCATCTAGTGCTCTGATGAATTAAATCCTTGATCAAAGGCAACAGGGACTACGTAGAAGTATTTGTAATGGCAAATTACAATACTCAATTAATAGTTGGTTGGATGCCAAAACAACCTTAAAAACATAAACTACCCTACTCGCATCCACAATTAATACGGAATGAAAAGGACGACGTTAGGTAGACTCATATTACCAGTAATTATGGGAATTCAAGTACACGTAAACCCAAAAAATGTTTCTGTAGCCGCGAGTTTACGCCGGCTATTTTGTTTTGTTTGGATCACGCATTATTGACTCGTCAGGGAGTGAATAATGCACGGTTATTCCGAGAAGCTAACCAATCAGGTTGTCTAAAACACTCAGGCCACAAGTGTGCATACATACTAAGATTTGTTAATATAACAAGTTTTATAAATGGCTTAAAACTTGGCATATTCACACACCCTCCACTCGCTGTAGCGTCACTGATTTATTCATTACCAGGGGCTTGGCTTCCTTTTCTAACTGGTGGGTTCTATTTTTACTATTATTATTTTTTTAATCTGTTTGAATTTTTTCTCAAATAATTATTAACATGTTTCAAACTATAAGCTTTAACAGGTTTTGATGTAAAGAAGGTCGAAATGGACAATCTTGCCAAAACAGGTTCTTCAAATGCAGGACCCAGCTTACTTACGTAAATTTTAGTCAGAAGCCTTCATAGGACGAGACACAAAACATTAGCAGGTTTTGTTATTCAGTAATTGAGTGACCCTGTATTTCTGTAGTTTAGTCAAAAAGTATAACAATTTCATCTAGTTTGAAAATTTTGAACCATTACCATATTTTCTCTAACAATGACGCCTGCATTTACCCCCCTACTCTTCCAACTTCCTTCCTCTTTCATTGGACATGCCATGATATCTTTTCAAGGCAATACAATTCAACATGGCCGTCGTTGGATGACAGGTCTATTAGAGAAGCTTCCTCATATAGAGCGGTTTTCAAATGACTGTCGAAAAGCCAAAACCAAAGCAATTACTCCGACCAATCACAACAGGAGCAGGCAGCGCGATAAACCAATCACAATTCCTAGCAATTACATGTAACTCGCTCGAAGCGCGGGAAAGATCACGTGTACATGGTGCTAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6H601	DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0383400 PE=2 SV=2
Q944S1	DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis thaliana OX=3702 GN=RH22 PE=2 SV=1
Q4PEX7	ATP-dependent RNA helicase DBP8 OS=Mycosarcoma maydis OX=5270 GN=DBP8 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006906 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050079 all species →	Family	DEAD box RNA helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959 all species →	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_035853-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.