Gene detail

Detailed information of FUN_035916-T1 in Acropora pulchra

Genomic Location: ptg000025l:13292667...13294965
NR annotation: XP_029204255.2, uncharacterized protein LOC114968280 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_035916-T1

GTCTTAATAAGGTTGACAGCGACTTTTCGTGCTGTACTTTGAGTGAATTCCTTGATGACAAGGCGAGGAGATAAGTCGTTAACCGATACGCGATAACTGCCTTGTCAATATCATATGGGAAACAGACTGTTCAGAAAGTCACGCACCAAAGTTGATAAACACTCGGAAGTGACCCTTTCCTGTCGCCCTATCAAGCCTTTGAGGAAAACCAACTATGGAGCTGCGAACTCGAATTTTCCTCGCCCTATCGCCCAGCTGCGACATAATCGCTGGTACGGATCAAACGACGCCCTCAATGACGAATTAGAGGAAGAAATACACTGTTGCACATTTCTTCCGGATGACGAATCCATTTTGGTAACTTGTTCGACGCCGTGCGGGCCAATTTTCCGATCTTACGAAGGTCGCGGCCATTTTAGAGTATTTGATATCAACTCAGGTTCTTGTAGGAAGGAAATTCTCACACATCACTCCCAGGGATGTGACATTTCAGCGGACGGAGATCTGATCACCTTCATTTCGAACTTGGGAAGAGGGGAAGTGGCAATGGTCAAACGAAGCCGTGATACCAGAGGCGCGATTGAAGAGAAAGTAGACAAATTTCAACCGAGTTGCACCGGAATCACTGGACAAACCCTCTGCTGCAAGTTTTCACCAGATGCTGCATTCATAGTCAGCGCATCTTCATTGGATTTTCACAGCATCAGAGAAACAAATGAGTTGCGATTATGGAACGTGAAGTCCATGCAGACCGTGAAGAGGATTGTCTTGCGCGATGTAACAGATTTTTGTGGCTTCGTCACAAGCTGCGAGTTTTCTCCCGACGGTCAGTACATCGCTGTCACAACTTCTCAAGAGCAGCTGTGTATTCTAAAGAGCAAAAGCTTCGACATTGCATCTGTGTTGAGAAAGCGTTGTCGTGGAAATAAATGTTGGTGTGTATTCAATCCGAGATGGAAATGCGAAGTGCTGGCTTGTTGTTTACAAGATGGACGCGTAGAGGTATGGAAAAAACTGGATCATCCAGCAAGCTGTGAAGTAAAGTACATTTGTGAAAAAGAGCATAAAGTTTCTATTTCACAGCGACTGTGTTCTTGTAGATATTCCCCCGATGGTTTGATGTTGGCTATTGGAACATCAGATGCCAACATTATGGTCCTCAATGGTGACACTCTAGACACCTTATTTTGCCTTGACTGCAAATTAGAATCAATCCCTGATTCTTTTAGACCAAGATTTCTAAACACCAATGTCCATTGTGTTGCCTTTTCAAAATCACAGCAGTATGTTGCCGCAGGTTATAGCGATGGACTGGTTAGGATATGGGCTATGCCAGTGCGATTTGACTTGAAGCATTTATGCCGTGTGGTCATTTTACACAATGTTCCATCAAGTGAAATTTGTTCCCTTCCAATCCCTTGTGGGATTAAGGGATACATTCTAAACACGTACAGTTAACTTTGATCATAACAAGAGGTGGGAACTACGCATGTGTCACGAGAGATTTCTTTCTTTACGACAGGAGGTTGTAAACAAGCTTCATGTCACCTAAAGCACTAGCCTGTGCCATTGTTAATCTAATGTTCAATTATTAGTTTTGTCATATTAGTAAATTAAGCCTAGGACAAGGCAAGTGCTTCCTGGTCTGCAGAGCAGGTTTTTGTAGTTTTCTGTTGTGTGACCAATGTTTCCTATTTCATCAATGCTATTTCAAAAGGGGGTGGGATGAGTAGACTAGATGGACAAGCACTAGAAAGAAAAGTCAACCCTTTCCCCACCCCTACTACAATATGGTGGTGTTTGTATTCCCCCCAGTCCTCATTCACTTTCACTATCGAAGATCGTTTCACTTCACCAGTTCAAATTCCCACCAATTCATCCTTGTCACACGGCGGCCATATTGTTCTGGGAGACCAAAAGGGCTTTGTTTTACCACGCTAAGCCTCGCAATGGAAACCATGGGGATGAGGCTTAGCGTGGTAAAACAAAGCTTTTTTTGGTCCCCCGGGGCAATATGGCCGTCTTGTGACAAGGGTGAATACTGCTAGGTTGTTAGTAATTTCTGATTGCACTCACAGCACTGTATTACCTTTGCACTCATAATTTTATGTTCACACAATCAAGGTTTTGCAGTAATTATTATTTATTGAAAGTTAAAAGATAGTAATATCCAAGATAGCTGCTGGCAAATTGAGAGAGAAAGCGTAAAGGACAGTCACAACAGATAGCCACAGGGTAGGATGTATGTTCTCTTTCTGTCTCATGTATACAATGCTTGGAAATGTGCCTTAATATATAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF07525	SOCS_box	SOCS box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001496	Domain	SOCS box domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036036	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan
IPR051983	Family	WD repeat and SOCS box domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15622	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24743	WDR31; WD repeat-containing protein 31	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala