Gene detail

Detailed information of FUN_036019-T1 in Acropora pulchra

Genomic Location: ptg000025l:14555138...14557596
NR annotation: XP_015756426.1, PREDICTED: Bardet-Biedl syndrome 10 protein homolog [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_036019-T1

ATGGCGGCCGTAAGAGAAGCACTGAAGGTGTGTGAGACTTTGGAAGCAATATTAAAAAGAACCTTTGGACCCAGTGGAATAGATGTCTTGCTGAATTCGACCTCTGGCGAAATATTGATAACAAACAATGGCGCATTAATTTTGAGATCGCTAAGTCTGGAAACACAGATCGGACGAACCATTGTTGACAAAGTTGTTTCGCACTGTAGCATTACTGGAGATGGATCAACCTCGTTTATTTTGCTACTAACTGCATTGCTAAGATCCATCAATACACATATTGATGTAAGGTCAACTATCAGGGTTGACGAAATCTCCCCTACTCTAAGAGAATCCTTTCTTTCTCTGTCTAAAGGTTTTTTCAAACTCGAATCTCAACTAGAAGAAGTGATAGGCCCAGTTTTTGACAAAATCTCCATAAACGTGGAAGTCAAAGACGATAATATTTCTTTGATAAGGCCAAGTATTACAAGGCTTATTTTCACTGCTCTTGATGGGTCATTTCCTGGTAGTATAGTGAATCAGTTGGCTGAACTTCTATCTGAATTAGTTACCAGAATCTGCAACTCCTCAAAATCTTTGAACGATTCACTTCTGCAAATAATTGACGGCTTTTCCCAGATCTGTATAGAAGTTCCAGGCATTCCTGTGTCATCATCTCAAATCACTCGTGGAATTGTAATTCCCCGTGAATTTGCTACAGAGCTTGAAAAGATACCATCTCCAGCATACAAGTTTGTCATCTTGAACTGTAGTTTTGACTACTCAGGTCCAGTGGCATCTTCCACTGTTAAAATATGGGATCAAATTTCACTGGATGCCAATCTTCAATGGAAACGAAACCAACTACAAAAGCTGATTTCCAGGTTTCAAGAGATCAACGTCAGACTCATTCTGTCATCAGAAAATATTACTGACCTTGCCTTACATTTTTGCAGGCAACATAACATTGCTGTTGTGAATATGATCCCCCCAGAATTCACACAATATATTTCCAAGTGCTCTAGAATCATTCCAATTGAACATCTTGACTGTGATAGCCTTGATGATCACTTCATAGGGACAGGTACTTTTTGTGGTGTCCAAAAAGTTGGCCAAAAGAAATTTGTCCATCTGGAAGTAAAACTGTCCAGTCCTAATTTCATTCCTCACAGCTTATTTCTCTGCTCTCCAATGCAAGGAATATGTAAGCAATATTGCATTGCACTTCATAATGCCTTAAAATGTGTGAAGATGTGCTTCAGCAAAGATGGGAAGAAGCTATGTTTTCTTCCTGGCTCTGGTGCTACAGAATTTGCTTTAAGCTTCAACTTAAAATCCCTGGCTGCTAAAATGGGAGATTCCAATTTGTTACTAGCTATCAACTTATTAAGTGATGCCTTACAGGCAATTCCAGCTACACTTCATCAGAATTCATTTTCCATGCAAAATCAGAAGGATAATTTTGTATATTGTTTAAATGAGATGGAAAGATCTTTGAAGAATGACGATCAACTGCTTGGAATAAGCTCCAACAGTGGAAAACCTGTGGACCCATACAAGTTATCGATATTTGAACCTCTCTTTGGAAAAAATTTACTTTTACGAAGTGTATTGCAATGCCTCTCGCAGCTGCTGAGAATAGATAAATTTTTGGATTTTACTAAAACAATTACTCCTCTCGCCCTCATAGCCTCTGAGTCAATAGCCCATTATGATTCAGCCTTCGGCCTCATGGGCTATAGCCCATTTGGGCTCGAAGAATAATTGTTAAATATACCTAGGAGGGGACCTTATGTCCTTTTGTAAAATTACCTGCCTCTGGGCGAATTGCTAAATAAATAAACAAATAAATAAAGAACATTTGGAGGCTGGTTTATCACTAAGCACCCGATAAATAAGAACTCAATCAGCCTGACCTTCGAAATCGTGAGTTCTTTGATGCAGGTGTTAAGGACGGTGCCTACTAATTAAAGATAATTTTTCCCCGGCGTGTGATTATGCAGGAAATGTAGGTCTTAACAATTCCTATTGAAATCCAATTCATGAATAATATCGTGGTTACCCCCAATTTTCTTTTTGGATACCTAAAGTACTTACTAAGACCTACTTTCTCCGGATAGTTTTAAACCCGGCAAAAATATCCCTGTATTAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R8P3	BBSome complex assembly protein BBS10 OS=Pongo abelii OX=9601 GN=BBS10 PE=2 SV=1
P48424	Thermosome subunit alpha OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) OX=273075 GN=thsA PE=1 SV=1
Q6BXF6	T-complex protein 1 subunit delta OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=CCT4 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002319 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR017998 all species →	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR042619 all species →	Family	Bardet-Biedl syndrome 10 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14667 all species →	BARDET-BIEDL SYNDROME 10 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0051131 all species →	Biological Process	chaperone-mediated protein complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19401	BBS10; Bardet-Biedl syndrome 10 protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.