Detailed information of FUN_036033-T1 in Siderastrea siderea

Genomic Location: contig_40:5829766...5830393
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02827
all species →		PKIcAMP-dependent protein kinase inhibitorFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004171
all species →		FamilycAMP-dependent protein kinase inhibitorInterproscan

 PANTHER
No PANTHER signature was detected for FUN_036033-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0004862
all species →		Molecular FunctioncAMP-dependent protein kinase inhibitor activityInterproscan
GO:0006469
all species →		Biological Processnegative regulation of protein kinase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_036033-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_036033-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
25TPM > 0
7Conditions
2,637.2Max TPM
196.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 303.10 2,637.19
holobiont · low.pH Control.temp 20 2 68.28 870.78
holobiont · control.pH_high.temp 20 5 193.57 1,335.64
holobiont · control.pH Control.temp 19 7 254.04 1,158.46
Whole organism 4 4 80.26 90.36
unannotated 1 1 99.38 99.38
live coral tissue/skeleton 1 1 135.75 135.75

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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