Gene detail

Detailed information of FUN_036116-T1 in Acropora pulchra

Genomic Location: ptg000025l:15529259...15558264
NR annotation: XP_044175878.1, uncharacterized protein LOC114955557 isoform X2 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_036116-T1

ATGGGTTGCGGCTCAAGTAATGCTTCATCGACAAGCGATCAAGATCATCAACAAAACCAACGTTCGGATAATTCAAAGGAAATTATCAATAATTCTAACGCTGAAGAGAATAACAGAGTTAAGGAACTGCCCCACGTTGTGTTTGAACAATCAAAAGTAGTTACTCAAGGAGGATATGGTGCGCAAGTGGAAAAATGTGACGATAAAACGAAAACAGTCTCCAAATCACGGGAGCTGACAATTTTGCACTTCAATGATGTTTACAACATTGAGTCTCGCGAAAAGGAACCTGTAGGAGGGGCTGCCAGGTTTGCTACAAAACTGGCAAGCTATAGACATCTAAATCCGCTGATCGTGTTCAGTGGAGACTGCTTAAATCCTTCTTCAATGAGCAGCGTGACAAGTGGAAAACAAATGATTCCAGTTTTAAATGCACTGAATGTGAATATTGCAGTGTTTGGCAATCATGACTTTGATTTTGGTGTGGGTGAGCTTATTGAGTTCAGTACTGCTACAACATTTCCATGGCTTATGAGTAATGTGATTGATAACATGACAGGCAGGCAACTGGCAGATGGTGAGGTCAAACGGATAATTGAGTGGTATGGAAGAAAGGTTGGTTTCATTGGTTTGGTTGAAGAAGAGTGGCTTGTTACTTTAGCAACTGTGGACAGGGAAGAAGTCACCTACCTGGATTTTGTAACAGAAGGAACAAAGTTAGCAAAAGAATTAAGAGAAGAGGGTGCTGAGTTTGTTATAGCTTTGACACATATGCGAGTACCAAACGATCGCCGTCTTGCCGAGGAAGCTGCTGGAATTGATCTTATATTAGGTGGACATGATCATGACTACTTTGTGCAAAAGATTAATGGTGTTCAAGTTGTAAAGAGTGGAACAGACTTCAGAGAGTTTAGCTGTATTACTGTGTCATTCACCAGTGATAATAAGTTTTGTTTAGATGTACAAAGGATTGAAATTACAAGTGATATTCCAGAAGACCCAACAGTTAAATTGACGGTTGATAAGTTTGTTGGGTTATTGAATGTCATGATGGAGGAAACCATTGGTGAATTGGAAGTAGAACTTGATGGAAGATTCTCCAGCATGAGGACAAGAGAAACGAATCTTGGTAACTTTGTTACGGACATCATATTAAATGTAACTGAAGTGGATTGTGTTATTTTAAATTCTGGAACTCTACGTTCAGACTGTATCCACCCGCCTGGAACATTCAAAATGAAGGACCTTTCAGCCATCCTTCCTATGCCAGATATTCTGGTAGTATTAGAACTCACAGGTGATCAAATTTTAGAGGCCCTAGAAAATGGAGTAAGTCAGTGGCCAAAACTTGAGGGAAGGTTCCCCCAGGTTGCAGGAATGAGATTTTCATTCAATCCTGAGCAAGCTCCTGGCTCTAGGATACTTAAAAATAGTGTTGAAATTAATGATGAGCCACTTGAAAAGGACAAGAAATACAAAGTTTGTACAAAGTCTTATCTCTCTAAGGGAAAAGATGGTTATCAGGTCTTTACAAAGGGCACAGTTCTGATTGATGAAGAGAATGGTCCAATATTAAGCACAATAGTGAGGAATCATTTCCGCTCCATTAACATTGTGAGAGGTGTTACCAAATCAAAATCTCCACACAGGCAGAGTTTAATAATGCGACATAGACCAAGCAATTTGATTGAGGATGAAAGTCGAACACCATCACAAGAATTTTTTCTCAGCTTAGAGCGAGAACATGCCAAGATTTCACCTCAGGTAGAGGGTAGAATTACAATGGTTACTGAAGAAAATGACATTAAGAAAGCAGCCAGTTTCTCAGAAGATGAAGGAAATACCCTTAACAATGTGAAAGCACAACAAACAGGCATTAAAGACCTCTCAATGGTGGATCAACCAGATGAGATTGAATCAAATAGCACAATGTCAGTAGGAAATAAGGAATTAAATGTTGAACCTGAAAACAAGAACATTAAGAGTGTACTGGTTGAGACTGTTGATCAGGAAAGCACTTTGGCATCTTGTGGACGTCCTGCACAAAACACTGAACAAGAAACACAAGGATTCCATGAAGCTGAAGAAACGTTGGGCTTGAACAATGAACATCTTAATGGCAGTCACAAAATCACCAAACAAGAAAATCCCGAGAAGATTAAAGAACCTGAAAATGAATTCAACCAAGAGATAGCAGGTGGAATCATCAACAAGGAACTTGAACAAATCAATGGAAAATCTTCAGAGGAAGAGAATAATACCACAACAACCACTGAGAGGACATTGGCTCCAGATTTGGCAACAGAAGATGAGTACTGGGATTTATGGGAGGCTGTGAAAGTGGATGATATTGATGTGGTTACACATCTGCGTAAGGTGAAGAATATCAAATTTACACGATTTCAAGACAACAAAACAATCCTACATCTTGCTGCTGAAAGAAATTCATCTAAGGTGTTATTGTTCCTGCTAACTGATGGAGAAATGGATGCAAATGTCAAAGATGAAATATTACAGGGTGTCCCTCTTCATGGTGCTGCAGAGTATGGCTCAATTGATGCTGCAAGAGTTCTTTTAGATCATGGAGCAGAGATCAACATGCAAGATCTTATTGGAAACACTGCTCTGCACATTGCTTGTGAACACAATCAGGGTGAAATGAAGGCATTCCTTCTTAATCATGGAGCAGACAAAAATGTTGTCAATTCAGACGGGAAAACTCCTGCTCTTTAA

Transcript

FUN_036116-T1

ACACAACAAGTTGAAGTCAATGTCTACAAATAGCTGCTTATTTTATGAGTATTGACACTTGGTTATGCTTTCGTTGCATCAGAAATGTTTTCCCTTCCATACAATGAAACGCTAAATTTCAACAGATTCATAACTACATGAAGGAATGGGTTGCGGCTCAAGTAATGCTTCATCGACAAGCGATCAAGATCATCAACAAAACCAACGTTCGGATAATTCAAAGGAAATTATCAATAATTCTAACGCTGAAGAGAATAACAGAGTTAAGGAACTGCCCCACGTTGTGTTTGAACAATCAAAAGTAGTTACTCAAGGAGGATATGGTGCGCAAGTGGAAAAATGTGACGATAAAACGAAAACAGTCTCCAAATCACGGGAGCTGACAATTTTGCACTTCAATGATGTTTACAACATTGAGTCTCGCGAAAAGGAACCTGTAGGAGGGGCTGCCAGGTTTGCTACAAAACTGGCAAGCTATAGACATCTAAATCCGCTGATCGTGTTCAGTGGAGACTGCTTAAATCCTTCTTCAATGAGCAGCGTGACAAGTGGAAAACAAATGATTCCAGTTTTAAATGCACTGAATGTGAATATTGCAGTGTTTGGCAATCATGACTTTGATTTTGGTGTGGGTGAGCTTATTGAGTTCAGTACTGCTACAACATTTCCATGGCTTATGAGTAATGTGATTGATAACATGACAGGCAGGCAACTGGCAGATGGTGAGGTCAAACGGATAATTGAGTGGTATGGAAGAAAGGTTGGTTTCATTGGTTTGGTTGAAGAAGAGTGGCTTGTTACTTTAGCAACTGTGGACAGGGAAGAAGTCACCTACCTGGATTTTGTAACAGAAGGAACAAAGTTAGCAAAAGAATTAAGAGAAGAGGGTGCTGAGTTTGTTATAGCTTTGACACATATGCGAGTACCAAACGATCGCCGTCTTGCCGAGGAAGCTGCTGGAATTGATCTTATATTAGGTGGACATGATCATGACTACTTTGTGCAAAAGATTAATGGTGTTCAAGTTGTAAAGAGTGGAACAGACTTCAGAGAGTTTAGCTGTATTACTGTGTCATTCACCAGTGATAATAAGTTTTGTTTAGATGTACAAAGGATTGAAATTACAAGTGATATTCCAGAAGACCCAACAGTTAAATTGACGGTTGATAAGTTTGTTGGGTTATTGAATGTCATGATGGAGGAAACCATTGGTGAATTGGAAGTAGAACTTGATGGAAGATTCTCCAGCATGAGGACAAGAGAAACGAATCTTGGTAACTTTGTTACGGACATCATATTAAATGTAACTGAAGTGGATTGTGTTATTTTAAATTCTGGAACTCTACGTTCAGACTGTATCCACCCGCCTGGAACATTCAAAATGAAGGACCTTTCAGCCATCCTTCCTATGCCAGATATTCTGGTAGTATTAGAACTCACAGGTGATCAAATTTTAGAGGCCCTAGAAAATGGAGTAAGTCAGTGGCCAAAACTTGAGGGAAGGTTCCCCCAGGTTGCAGGAATGAGATTTTCATTCAATCCTGAGCAAGCTCCTGGCTCTAGGATACTTAAAAATAGTGTTGAAATTAATGATGAGCCACTTGAAAAGGACAAGAAATACAAAGTTTGTACAAAGTCTTATCTCTCTAAGGGAAAAGATGGTTATCAGGTCTTTACAAAGGGCACAGTTCTGATTGATGAAGAGAATGGTCCAATATTAAGCACAATAGTGAGGAATCATTTCCGCTCCATTAACATTGTGAGAGGTGTTACCAAATCAAAATCTCCACACAGGCAGAGTTTAATAATGCGACATAGACCAAGCAATTTGATTGAGGATGAAAGTCGAACACCATCACAAGAATTTTTTCTCAGCTTAGAGCGAGAACATGCCAAGATTTCACCTCAGGTAGAGGGTAGAATTACAATGGTTACTGAAGAAAATGACATTAAGAAAGCAGCCAGTTTCTCAGAAGATGAAGGAAATACCCTTAACAATGTGAAAGCACAACAAACAGGCATTAAAGACCTCTCAATGGTGGATCAACCAGATGAGATTGAATCAAATAGCACAATGTCAGTAGGAAATAAGGAATTAAATGTTGAACCTGAAAACAAGAACATTAAGAGTGTACTGGTTGAGACTGTTGATCAGGAAAGCACTTTGGCATCTTGTGGACGTCCTGCACAAAACACTGAACAAGAAACACAAGGATTCCATGAAGCTGAAGAAACGTTGGGCTTGAACAATGAACATCTTAATGGCAGTCACAAAATCACCAAACAAGAAAATCCCGAGAAGATTAAAGAACCTGAAAATGAATTCAACCAAGAGATAGCAGGTGGAATCATCAACAAGGAACTTGAACAAATCAATGGAAAATCTTCAGAGGAAGAGAATAATACCACAACAACCACTGAGAGGACATTGGCTCCAGATTTGGCAACAGAAGATGAGTACTGGGATTTATGGGAGGCTGTGAAAGTGGATGATATTGATGTGGTTACACATCTGCGTAAGGTGAAGAATATCAAATTTACACGATTTCAAGACAACAAAACAATCCTACATCTTGCTGCTGAAAGAAATTCATCTAAGGTGTTATTGTTCCTGCTAACTGATGGAGAAATGGATGCAAATGTCAAAGATGAAATATTACAGGGTGTCCCTCTTCATGGTGCTGCAGAGTATGGCTCAATTGATGCTGCAAGAGTTCTTTTAGATCATGGAGCAGAGATCAACATGCAAGATCTTATTGGAAACACTGCTCTGCACATTGCTTGTGAACACAATCAGGGTGAAATGAAGGCATTCCTTCTTAATCATGGAGCAGACAAAAATGTTGTCAATTCAGACGGGAAAACTCCTGCTCTTTAATAACAGCACCGGTAGTAGTGGTGGACAGGAGACAGCATCACGCCTTGTGTTGTAAATCACCTTTGCATCAGTTAGTCAGTACTCATGACTTAAAAAAGAAACTCTTGCTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O34313	Trifunctional nucleotide phosphoesterase protein YfkN OS=Bacillus subtilis (strain 168) OX=224308 GN=yfkN PE=1 SV=1
A9BJC1	Mannosylglucosyl-3-phosphoglycerate phosphatase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=403833 GN=mggB PE=1 SV=1
Q8YAJ5	Cell wall protein Lmo0130 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=lmo0130 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002792 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF02872 all species →	5_nucleotid_C	5'-nucleotidase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036907 all species →	Homologous_superfamily	5'-Nucleotidase, C-terminal domain superfamily	Interproscan
IPR041821 all species →	Domain	CG11883-like, N-terminal metallophosphatase domain	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR006179 all species →	Family	5'-Nucleotidase/apyrase	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR008334 all species →	Domain	5'-Nucleotidase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11575 all species →	5'-NUCLEOTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0009166 all species →	Biological Process	nucleotide catabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01081	E3.1.3.5; 5'-nucleotidase	EC:3.1.3.5	Nicotinate and nicotinamide metabolism	ko00760	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora pulchra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora pulchra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →